Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11600 630 / 0 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT5G04630 389 / 2e-130 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10560 382 / 7e-128 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT3G10570 378 / 2e-126 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT5G04660 378 / 4e-126 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT1G64940 334 / 3e-109 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT1G64930 327 / 2e-106 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64950 317 / 1e-102 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT2G12190 316 / 5e-102 CYP89A4 Cytochrome P450 superfamily protein (.1) AT3G03470 287 / 4e-91 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018350 [exp] 989 / 0 AT1G11600 637 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018351 [exp] 865 / 0 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007658 [exp] 862 / 0 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007660 [exp] 620 / 0 AT1G11600 706 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10034156 [exp] 419 / 3e-142 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10028654 [exp] 320 / 7e-104 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 315 / 2e-101 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 313 / 8e-101 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 301 / 3e-96 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019000 [exp] 753 / 0 AT1G11600 645 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.004G018800 [exp] 663 / 0 AT1G11600 701 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.008G025500 [exp] 411 / 3e-139 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.005G079600 [exp] 313 / 5e-101 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088018 [exp] 310 / 6e-100 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088086 [exp] 308 / 3e-99 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G087950 [exp] 308 / 6e-99 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 304 / 1e-97 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.003G104600 [exp] 300 / 6e-96 AT1G64940 455 / 2e-156 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 291 / 2e-92 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10007659 pacid=23140277 polypeptide=Lus10007659 locus=Lus10007659.g ID=Lus10007659.BGIv1.0 annot-version=v1.0 ATGGACCTCATAGACATCTCCCTGTCTTCCGCCGCCGTCCTCCTCCTCTACGTATGGTGGCGCCGCTCATCCTCATTCACCAAACTACCCCTCCCGCCCG CCGTTCCCGGCTGGCCCATCGTTGGCAACTTGTTCCAAGTCATCCTCAGCCGCCGTCACTTCACGTTCTTCATACGTGATATCCGCAAGAAGCACGGCCC GATCTTCACCATGAACATGGGGCAGCGGACTATGGTGGTCGTCACCTCGCCCCAATTAATCCACGAGGCTCTAGTCCAGAGAGGGTCCGAATTCGCCTCC CGCCCGCCCGACTCGCCGATCCGGCTTGTCTTTAGTATTGGGAAGTGTGCAGTGAATTCCGCTGTCTACGGCCCGCTGTGGCGGGTCTTGAGGCGGAATT TCGTTACCGAGCTTATGAGCCCGGTCCGGGTTAGACAGTGTAGCTGGATCCGTGATTGGGCTTTGGAGAATCACATGGGCCAGATACAGTCTGATTTTAA AGAATTGGGTCATGTGGATGTTCTGAATGTATGTCGGTTCACTATGTGTCGGATCCTTGCGTGCATCTGCTTTGGTGCGAAGATTTCCGAAAAGTGGATC CACGACATTGACAATATAACAACAGAAGTGATGCTAATATGTACTCCTCACCTCCCCGATTTCTTTCCGATCCTAACGCCGTTGTTCGGGAAGCAAATGA GGAGGGCTAAGATGCTAAGGAAGAAACAAATGGAGTGTTTCCTTCCTTTGATCAATAATAGGAAGGCTTTCGTTGAGAAAGGTGAACAAGGCCCAAAGTT GGAGATGGTGAGCCCAATTGGCGCAGCCTACATTGACTCTCTATTCGGGCTTGACGCTCCCGGCCGAGGCCCATTAGGTGAAGATGAGATGGTCACTCTA TGTAACGAGCTTTTCGTTGCCGGGATGGACACGAGCACCAGCGTTCTCCAGTGGGCGTTTTTCGAATTGGTCCTCCAACAGTCGATCCAGCAGAAGCTCT ACGAAGAGATCGTTTCCCACGTTGGATCCGAAGGGCGAATCACAGAGGAACACGTGGAGAGGATGCCTTACCTGACCGCGATCATCAAGGAGACCTTGAG GATGCACTCCCCGGCGCACTTCACGCTCTCCCACGCGCCGACGGTGGAGACGGAGCTAGGCGGGTACAGGATTCCCACTGACGTAAGCGTGGAGTTTTAC GTCGAGTGGATGACGGAGGATCCGACCGTGTGGAAGGATCCGGATGTGTTCCGACCCGAAAGGTTCCTAGACGGCGGGGATGGAGTTGCGGTGGATATGA CGGGGACTAAAGGAGAAGTGAAGATGCTTCCGTTCGGGGCGGGTCGGAGGACCTGCCCGGGTCTGTCGTTGGGGGTTTTGCATGTGAACTTGATGTTGGC GAAGATGGTTCAGGCTTTCAAGTGGGTGGCCTCGCCGGATTACCCGCCTGAGCCAACAGAGGCATTTAACTTCACTGTTGTGATGAAGAACCCGCTTAAG GCGGTGATCGTGCCTCGAGGGTGA
AA sequence Show only first row Show all	>Lus10007659 pacid=23140277 polypeptide=Lus10007659 locus=Lus10007659.g ID=Lus10007659.BGIv1.0 annot-version=v1.0 MDLIDISLSSAAVLLLYVWWRRSSSFTKLPLPPAVPGWPIVGNLFQVILSRRHFTFFIRDIRKKHGPIFTMNMGQRTMVVVTSPQLIHEALVQRGSEFAS RPPDSPIRLVFSIGKCAVNSAVYGPLWRVLRRNFVTELMSPVRVRQCSWIRDWALENHMGQIQSDFKELGHVDVLNVCRFTMCRILACICFGAKISEKWI HDIDNITTEVMLICTPHLPDFFPILTPLFGKQMRRAKMLRKKQMECFLPLINNRKAFVEKGEQGPKLEMVSPIGAAYIDSLFGLDAPGRGPLGEDEMVTL CNELFVAGMDTSTSVLQWAFFELVLQQSIQQKLYEEIVSHVGSEGRITEEHVERMPYLTAIIKETLRMHSPAHFTLSHAPTVETELGGYRIPTDVSVEFY VEWMTEDPTVWKDPDVFRPERFLDGGDGVAVDMTGTKGEVKMLPFGAGRRTCPGLSLGVLHVNLMLAKMVQAFKWVASPDYPPEPTEAFNFTVVMKNPLK AVIVPRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	0	1
AT5G26620			unknown protein		Lus10001512 [exp]	1.0	0.9364
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	2.4	0.9339
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10042166 [exp]	3.2	0.8783
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	4.9	0.9077
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	5.3	0.8843
AT3G52740			unknown protein		Lus10014197 [exp]	6.0	0.8997
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	7.3	0.8886
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10010605 [exp]	8.3	0.8520
					Lus10005901 [exp]	10.5	0.8730
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	12.4	0.8960

Compare expression of checked genes

Lus10007659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.