Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11600 663 / 0 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT5G04660 389 / 1e-130 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT3G10570 384 / 2e-128 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT5G04630 366 / 9e-122 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10560 356 / 1e-117 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT1G64940 330 / 2e-107 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT1G64930 328 / 7e-107 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64950 327 / 2e-106 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT2G12190 325 / 2e-105 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64900 291 / 1e-92 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018351 [exp] 619 / 0 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007658 [exp] 617 / 0 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018350 [exp] 613 / 0 AT1G11600 637 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007659 [exp] 612 / 0 AT1G11600 639 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10034156 [exp] 386 / 3e-129 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10020360 [exp] 327 / 3e-106 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 311 / 3e-100 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 310 / 1e-99 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 298 / 6e-95 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018800 [exp] 753 / 0 AT1G11600 701 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.004G019000 [exp] 672 / 0 AT1G11600 645 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.008G025500 [exp] 396 / 3e-133 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.003G104600 [exp] 313 / 3e-101 AT1G64940 455 / 2e-156 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.005G079600 [exp] 311 / 2e-100 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088154 [exp] 307 / 8e-99 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088086 [exp] 306 / 2e-98 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G087950 [exp] 306 / 4e-98 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088018 [exp] 304 / 2e-97 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 290 / 4e-92 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10007660 pacid=23140287 polypeptide=Lus10007660 locus=Lus10007660.g ID=Lus10007660.BGIv1.0 annot-version=v1.0 ATGGAGCTTTCAGCCATAGATCTCCTCATTCTCGCTGCATCACTCGTCTTCCTCCGCCTGTGGTGGCGCCATTGGTCTTCCACTGGCGGTGGGTCCCAAA ATCTCCCTCCCGGTCCACCCGGCTGGCCACTGTTTGGCAACCTTTTCCAAGTCATCCTCCAGCGCCGCCCATTCATCTTCATTGTCAAGGACTTGCGATC CAAGTACGGCCCAATCTTCACCATGCAGATGGGCCAGCGGACCATGGTCATCGTCACCAGCTCCGAACTCATCCACCAGGCCCTCGTCCAGCGTGGCCCC ACTTTCGCTTCACGCCCTCCCGACTCACCCATCCGGCTCGTCTTCAGCGTGGGGAAATGTGCCATCAACTCGGCTGAATACGGGTCCGTTTGGCGGACAC TGAGGCGTAACTTTGTCACTGAGCTGATCAACCCGGTCCGTATCCGCCAGTGTGGTTGGATACGGAAGTGGGCCTTCGAGAAGCACATGAAGCGGCTCGC CCAACAAAACGGCGCAGTTGAGGTTATGGTTGACTGTCGTTTGACCATTTGTAGCGTTCTGATTTGTTTGTGCTTCGGGGCCCGAATTTCGGACAAGAAG ATATTGGAGATCGAGAGCGTTTTGAAGGAAGTCATGATGATGACAACACCGAAACTTCCAGACTTCCTACCCTTTTTGGGACGGATTTTTCGGAAGACGA TGAACCAAGCACTTGAGCTAAGGAAGAGGCAGCTCGAATGCTTGGCCCCGCTCGTTCGAGCCAGGCGGGCTTTCGTGGATGGTACCACGAATAATTATCA TGGACCGATGGAGATGGTAAGCCCAAAGGGAGCGGCCTATGTAGATTCTCTATTTGGGCTTAAGCCCGGGAAGAGAGATCCATTAGGGGAGGAGGAGTTC GTCACGCTTTGTTCGGAGGTGATAAGCGCGGGAACCGACACGAGTGCCACGACACTCGAGTGGGCCCTACTCCATTTAATCCTCGAACAAGGGATTCAAG AGAAGCTGTACAACGAGATCGTCGCCCGAGTGGGGAAGAACGGGGTGGTCAACGAGGATGACGTGGAGAAGCTGCCTTACTTGTCGGCGGTGGTGAAGGA GACATTCCGGCGGCATCCGCCGAGCCACTTTGTACTTTCCCACTCGACGAAGGAGGCGACGGAGCTGGGAGGGTACGGGATCCCCGCGGACGTACACGTG GAGTTTTACACGGCGTGGATGACTGAGGATCCGGATATGTGGAAGGACCCAGGGGAGTTCAGACCGGAGAGGTTTATGGACGGCGGGGATGGAGCTGACG TGGACTTGACGGGGACACGTGGAGTGCTGAAGATGATGCCGTTTGGAGCGGGTAGGAGGATCTGCCCCGCTTGGAGCTTGGGGGTGCTTCATGTGAATCT CTTACTGGCTAAGATGGTTCATGCTTACAGGTGGCTGCCCGATCCGAGTTGCCCGCCTGACCCGACTGAGACGTTTGCTTTTACCGTTGTGATGAAGAAC CCTTTGAAGGCTGTGATATGGCCGAGGTAG
AA sequence Show only first row Show all	>Lus10007660 pacid=23140287 polypeptide=Lus10007660 locus=Lus10007660.g ID=Lus10007660.BGIv1.0 annot-version=v1.0 MELSAIDLLILAASLVFLRLWWRHWSSTGGGSQNLPPGPPGWPLFGNLFQVILQRRPFIFIVKDLRSKYGPIFTMQMGQRTMVIVTSSELIHQALVQRGP TFASRPPDSPIRLVFSVGKCAINSAEYGSVWRTLRRNFVTELINPVRIRQCGWIRKWAFEKHMKRLAQQNGAVEVMVDCRLTICSVLICLCFGARISDKK ILEIESVLKEVMMMTTPKLPDFLPFLGRIFRKTMNQALELRKRQLECLAPLVRARRAFVDGTTNNYHGPMEMVSPKGAAYVDSLFGLKPGKRDPLGEEEF VTLCSEVISAGTDTSATTLEWALLHLILEQGIQEKLYNEIVARVGKNGVVNEDDVEKLPYLSAVVKETFRRHPPSHFVLSHSTKEATELGGYGIPADVHV EFYTAWMTEDPDMWKDPGEFRPERFMDGGDGADVDLTGTRGVLKMMPFGAGRRICPAWSLGVLHVNLLLAKMVHAYRWLPDPSCPPDPTETFAFTVVMKN PLKAVIWPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	1.0	0.9821
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10037027 [exp]	1.7	0.9786
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10002269 [exp]	2.4	0.9652
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10039214 [exp]	3.0	0.9602
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10035093 [exp]	3.2	0.9747
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	3.5	0.9792
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	4.0	0.9767
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10018657 [exp]	5.6	0.9278
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10004079 [exp]	6.0	0.9573
AT3G49950	GRAS		GRAS family transcription fact...		Lus10018498 [exp]	9.5	0.9515

Compare expression of checked genes

Lus10007660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.