Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61850 1766 / 0 phospholipases;galactolipases (.1.2) AT4G21780 55 / 1e-08 unknown protein AT2G26560 51 / 6e-06 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT1G79620 48 / 5e-05 Leucine-rich repeat protein kinase family protein (.1) AT4G37070 47 / 7e-05 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37060 46 / 0.0002 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT2G30105 45 / 0.0004 unknown protein AT1G12970 45 / 0.0004 PIRL3 plant intracellular ras group-related LRR 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018349 [exp] 2555 / 0 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2) Lus10009340 [exp] 54 / 8e-07 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10021899 [exp] 47 / 0.0001 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041180 [exp] 47 / 0.0002 AT1G04210 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003229 [exp] 45 / 0.0003 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10020140 [exp] 45 / 0.0008 AT3G47570 740 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018700 [exp] 1942 / 0 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2) Potri.011G000200 [exp] 1942 / 0 AT1G61850 1796 / 0.0 phospholipases;galactolipases (.1.2) Potri.004G018600 [exp] 66 / 2e-12 AT4G21780 88 / 2e-23 unknown protein Potri.011G000400 [exp] 61 / 1e-10 AT4G21780 74 / 7e-18 unknown protein Potri.002G128300 [exp] 55 / 3e-07 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.010G081400 [exp] 54 / 7e-07 AT1G04210 1212 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G042200 [exp] 51 / 6e-06 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.001G280500 [exp] 50 / 1e-05 AT2G30105 503 / 1e-179 unknown protein Potri.001G421100 [exp] 45 / 4e-05 AT4G21780 63 / 1e-13 unknown protein Potri.018G139700 [exp] 47 / 5e-05 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10007661 pacid=23140312 polypeptide=Lus10007661 locus=Lus10007661.g ID=Lus10007661.BGIv1.0 annot-version=v1.0 ATGTCTTGGGGATTAGGATGGAAGCGGCCGTCGGAGATCTTCCGCTTAAGTCTTAACTATGGCACGGAGGAGTCCTGGGACGATCCAATCCGTACATCGA GCTCCTCGTCGTGTTCTTCGTCGTCAACGATACCGCCGCTGGATCAGGATGGTGGGTTCCGCGTCGATTTGGATTGGACGGCCGGAGAAGACGAGGATCA GTTGGCCCTGAGGTTGCTGTCGCAGCTCACGGTGGCACTCCCGATGCCGCAGGATTGTGTGACGGTGGAATTGGCGACTGGAGATGAGGAAGGGGCGGAG GAAGGAAATGTCAGAGTAGAGATGAATGTGGTGAAGAGGAGGGAGCCGTTGAGAGGGATCACGATCTCGAAGGCCGGCTCTGGACAGCAGAGTGATGGCA TCGGTGTTTTGACGAGATTACTGAGGTCCAATTTAGCTTCTGCTGGAATTGGGGATGGTTCTGATTTTTCTTGTGCCGATCACTGGAAGACTGTCACCTT GCTTAACCTATGCGGCTGTGGTTTGTCGACATTGCCGCCTGAGCTACTACAATTGCCAACCCTCGAGAAGCTTTTTCTTGACAATAATAGACTTACTTTT TTGCCGCCTGAGCTTGGGGAGCTGAAAACTTTGAAAGTTCTCAGTGTTGATTACAACTTGTTGGTTTCTGTTCCTGTGGAATTGAGGCAGTGTGTTCAAC TCGTTGAGTTGTCATTGGAACACAACAAGCTTGTCCGTCCTCTTCTTGATTTCAGGGCCATGGCCGAGTTACAAATTCTTAGGCTATTTGGCAACCCTCT GGAATTTCTTCCTGAGATTTTACCACTCCACAAACTTCGCCACTTGACCCTTGCAAATATCAGGATTGTTTCTGATGAAAATTTAAGATCTGTGACAGTG CAGATAGAGGGGGAGAACAATTCTTATTTTGGAGCATCTAGACATAAGTTAAGTGCATTTTTTTCTCTTATATTCCGCTTCTCATCATGCCATCACTCTC TGCTAGCATCTGCACTGGCAAAGATAGTGAAAGACCAAGGTAACCGAGCAGTAATTGGTAAAGATGAGAATGCAGTGCGACAGCTCATTAGTATGATCAG TAGCGACGACCGTTATGTGGTTGAGCAAGCATGTTCTGCACTGTCCACTCTTGCTGGAGATGTTTCTATGGCAATGCAGTTGATTAAATGCGATATCATG CAGCCTATTGAGACAGTGCTAAGATCTGTTTCCCAGGAAGAAGTCATTTCTGTACTGCAAGTTGTGTCAACGTTAGCTTTTGCATCAGATAGAGTGGCCC AGAAGATGTTAACCAAGGAATTAATAAGATCATTGAAAGTTCTCTGTGGTCATAAAAACCCAGAGTTGCAAAAGTCGGCTTTGTTTGTGGTGGGTAATCT GGCGTTCTGTTTGGAAAATAGACGTATTTTGGTTACTTCTGAAAGTCTGCGGGACTTGCTATTGCGGTTGACAGTTACATCTGAACCTCGTGTGAACAAA GCTGCTGCTCGTGCCTTGGCCATTCTTGGAGAGAATGAAAATTTGAGACGTGCCGTAAAGGGAAGACCTGTGACCAAGCAAGGACTGCGCATCCTATCAA TGGATGGAGGTGGAATGAAAGGTCTGGCCACCGTACAGATTCTCAAGGCAATTGAAAAGGGAACTGGAAAACGAATACATGAGCTGTTTGACCTTATATG CGGCACATCAACGGGTGGAATGTTGGCTGTTGCTCTTGGTATAAAGCTAATGTCCCTGGATCAATGCGAGGAAATATACAAAAATCTTGGGAAACTTGTG TTTGCTGAACCTGTGCCCAAGGATAACGAAGCTGCATCATGGAGAGAAAAGTTAGATCAGCTTTACAAAAGTTCATCCCAGAGTTTTAGAGTTGTCGTAC ACGGATCCAAACACAGCGCAGATGAGTTTGAGAGACTGTTAAAGGAAATGTGTGCTGATGGGGATGGAGATCTATTAATAGACTCAGCAGTGAAATGCAT TCCAAAAGTTTTTACCGTCTCAACTTTGGTTAGCACGATGCCGGCTCAGCCATTCATATTTCGCAACTATCAGTACCCAGTTGGGACACCAGAAGTGCCA ACCACTCCTACAGAGGGATCTGGTATCCCTGTGTTAGGATCACCTTTTGCTGGTAGCCAAATTGGATACAGGCGCAGTGCTTCTGTTGGGAGTTGTAAAC ACCATGTTTGGCAAGCAATAAGAGCGTCATCTGCTGCACCGTATTATCTTGATGACTATTCTGATGACATAAACCGCTGGCAAGATGGTGCTATTGTGGC CAATAATCCTACCATATTTGCCATAAGAGAAGCACAGCTTCTCTGGCCTGACACAAGAATCGACTGTCTTGTTTCGGTTGGGTGTGGTTCTGTTCCAACA AAGCCCCGGAAAGGTGGTTGGCGCTATCTAGACACTGGGCAAGTTCTTATCGAGAGTGCATGCTCCGTGGACCGAGTGGAAGAAGCCTTAAGTACATTAC TCCCCATGCTTCCTGAGATACAGTATTTTCGTTTCAACCCAGTCGATGAACGCTGCGATATGGAATTGGATGAGACCGACCCTGCTGTATGGCTAAAGTT GGAAGCATCAGTCGAAGAATACATCCTAGAGAGTGCTGAAGCTTTCAAGAATGTCTGTGAGAGACTGGTGTTGCCATTCCAAAATGATGACAAGTTCTCA GACCACGTGAAAACTCAGCAACTTCCTAGAGTAAAGACGTTCACTACTGGTGGGAGTGGACCCACTCTCGGTTGGAGGCGTAATGTTCTACTTGTTGAAG CTCTTCACTGTCCTGATTCAGGAAGAGTTATGCACCATGCCCGGGCACTCGAGTCGTTTTGTGCACGCAACAGCATAAAAATATCTCATGTTCATAGCAC ATCTGGAATTTCGAAGACGGTACCAACCTCAATCCCATCACCCTTCACCTCACCGCTAATCACCGGAAGCTTTCCTTCAAGCCCACTTCTATACAGTCCC GACTTTGCCTCCCAAAGAATGGGTCGAATTGAAATGGTTCCACCTTTAAGCTTGGATGGAACTCAATCTCTAAGAGGGGGATCATCGCCACCAATGTCCC CTGCCGCACACAGACAGTTCTCTTTACCCGTTCAATCATTGCATGAAAAGCTGCAGCATGCACCGCAAGTGGGGATCGTGCACTTAGCCCTTCAGAACGA TTCATCTGGCTCGATTTTAAGTTGGCAGAATGACGTATTTGTGGTTGCTGAACCCGGAGAACTCGCTGACAAGTTTCTACAAAGTGTGAAGCTAAGTTTA TTGTCCATGATGCGGTGCCACCGACGGAAGGTAACATCGTTCCTTTCCAAGATATCAACGGTTGCTGATCTCGTTAGCTCCAGACCGTACTTCCAAGTTG GAAATGTCGTCCACCGTTACATAGGCCGGCAGACACAGGTGATGGAAGATGACCAAGAAATTGCAGCATACATGTTTCGAAGAACGGTTCCTTCAATTCA TTTGACACCTGATGATGTCCGATGGATGGTCGGAGCTTGGAGAGACCGGATCATCATCTGCACGGGAACTTATGGCCCTTCCCAGACGCTAATCAAAGCC TTCATGGACTCAGGTGCAAAAGCCGTCATATGTCCTTCCGCAGACCCGATGGACATTCCGGTGACAGCCGCCAGCTTGTCAGGTGACTTCAACTTGGAGA ACGGCGGGAAGTTCGAGATCGGAGAAGAGGAAGCAGAAGACGAAGACATCGAGCCTCCCAGTCCGGCAAGCGACTGGGAAGACAGTGATCCAGAGAAGGC CTGTGGGGGGTCGAACTCGATGGGGTTTTGGGACGATGACGAAGAGAAGCTAGCGCAGTTTCTAAGTCAGGTGTATGATTCGTTGTTCCGGGAAGGTGCC AGCGTGGATGTAGCCTTACGTACTGCTCTGGCTTCACATCGTAGACTGAGGTATTCGTACCATCTCCCCGGTTTGAAACCAACAGCCTCCTGCAGCTCCA CGCCAGCACTGAATCTCCCCGAGCAGATGATGTCCGCCGCAGCAGCAGCTCCGGTGGCGGTCGGGACACGTGGCACAGTGGGTTCGCTAGTTCGGAAAGA GATCGACTACTTTACCAGCTTGGACACGACCGGAAGCACTAGTGCTCGGAAATTTGCTGCTCCAGGGAGTATTAATGGTGGTGGTACTGCTACGTCTTCT TCTAGAAGATTTTGGCCGTGGAGAATTAGCTGGAGAAGAAAGAGATGTGGGAGCAAGTTGCTACATCCGGGGATGTGCGCCACCGTGGATGTTGGTGGTG ATTCTGGTGTCGGGATCTCCGGCCGGTTCAGTTATAGAGTTCTTAAGCATGATTATGAGTTAGATATGTAA
AA sequence Show only first row Show all	>Lus10007661 pacid=23140312 polypeptide=Lus10007661 locus=Lus10007661.g ID=Lus10007661.BGIv1.0 annot-version=v1.0 MSWGLGWKRPSEIFRLSLNYGTEESWDDPIRTSSSSSCSSSSTIPPLDQDGGFRVDLDWTAGEDEDQLALRLLSQLTVALPMPQDCVTVELATGDEEGAE EGNVRVEMNVVKRREPLRGITISKAGSGQQSDGIGVLTRLLRSNLASAGIGDGSDFSCADHWKTVTLLNLCGCGLSTLPPELLQLPTLEKLFLDNNRLTF LPPELGELKTLKVLSVDYNLLVSVPVELRQCVQLVELSLEHNKLVRPLLDFRAMAELQILRLFGNPLEFLPEILPLHKLRHLTLANIRIVSDENLRSVTV QIEGENNSYFGASRHKLSAFFSLIFRFSSCHHSLLASALAKIVKDQGNRAVIGKDENAVRQLISMISSDDRYVVEQACSALSTLAGDVSMAMQLIKCDIM QPIETVLRSVSQEEVISVLQVVSTLAFASDRVAQKMLTKELIRSLKVLCGHKNPELQKSALFVVGNLAFCLENRRILVTSESLRDLLLRLTVTSEPRVNK AAARALAILGENENLRRAVKGRPVTKQGLRILSMDGGGMKGLATVQILKAIEKGTGKRIHELFDLICGTSTGGMLAVALGIKLMSLDQCEEIYKNLGKLV FAEPVPKDNEAASWREKLDQLYKSSSQSFRVVVHGSKHSADEFERLLKEMCADGDGDLLIDSAVKCIPKVFTVSTLVSTMPAQPFIFRNYQYPVGTPEVP TTPTEGSGIPVLGSPFAGSQIGYRRSASVGSCKHHVWQAIRASSAAPYYLDDYSDDINRWQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSVGCGSVPT KPRKGGWRYLDTGQVLIESACSVDRVEEALSTLLPMLPEIQYFRFNPVDERCDMELDETDPAVWLKLEASVEEYILESAEAFKNVCERLVLPFQNDDKFS DHVKTQQLPRVKTFTTGGSGPTLGWRRNVLLVEALHCPDSGRVMHHARALESFCARNSIKISHVHSTSGISKTVPTSIPSPFTSPLITGSFPSSPLLYSP DFASQRMGRIEMVPPLSLDGTQSLRGGSSPPMSPAAHRQFSLPVQSLHEKLQHAPQVGIVHLALQNDSSGSILSWQNDVFVVAEPGELADKFLQSVKLSL LSMMRCHRRKVTSFLSKISTVADLVSSRPYFQVGNVVHRYIGRQTQVMEDDQEIAAYMFRRTVPSIHLTPDDVRWMVGAWRDRIIICTGTYGPSQTLIKA FMDSGAKAVICPSADPMDIPVTAASLSGDFNLENGGKFEIGEEEAEDEDIEPPSPASDWEDSDPEKACGGSNSMGFWDDDEEKLAQFLSQVYDSLFREGA SVDVALRTALASHRRLRYSYHLPGLKPTASCSSTPALNLPEQMMSAAAAAPVAVGTRGTVGSLVRKEIDYFTSLDTTGSTSARKFAAPGSINGGGTATSS SRRFWPWRISWRRKRCGSKLLHPGMCATVDVGGDSGVGISGRFSYRVLKHDYELDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	0	1
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	3.3	0.8549
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	4.1	0.9082
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	4.9	0.8869
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	5.7	0.8858
AT2G21630			Sec23/Sec24 protein transport ...		Lus10019516 [exp]	7.0	0.7979
AT5G54920			unknown protein		Lus10016477 [exp]	7.7	0.8740
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	8.7	0.8300
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027491 [exp]	8.7	0.8805
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	9.2	0.8257
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	9.6	0.8365

Compare expression of checked genes

Lus10007661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.