Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04870 239 / 3e-78 CLS cardiolipin synthase (.1) AT2G39290 52 / 9e-08 PGP1, PGS1, PGPS1 phosphatidylglycerolphosphate synthase 1 (.1) AT3G55030 51 / 1e-07 PGPS2 phosphatidylglycerolphosphate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018349 [exp] 351 / 2e-111 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2) Lus10023471 [exp] 58 / 1e-09 AT2G39290 332 / 2e-113 phosphatidylglycerolphosphate synthase 1 (.1) Lus10040348 [exp] 50 / 5e-07 AT2G39290 301 / 3e-100 phosphatidylglycerolphosphate synthase 1 (.1) Lus10001977 [exp] 50 / 5e-07 AT2G39290 310 / 1e-106 phosphatidylglycerolphosphate synthase 1 (.1) Lus10030301 [exp] 48 / 1e-06 AT2G39290 311 / 2e-107 phosphatidylglycerolphosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018300 [exp] 266 / 8e-89 AT4G04870 351 / 1e-120 cardiolipin synthase (.1) Potri.010G214900 [exp] 53 / 3e-08 AT3G55030 312 / 1e-108 phosphatidylglycerolphosphate synthase 2 (.1) Potri.008G046700 [exp] 52 / 2e-07 AT3G55030 316 / 5e-108 phosphatidylglycerolphosphate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [flax] [poplar] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence Show only first row Show all	>Lus10007662 pacid=23140294 polypeptide=Lus10007662 locus=Lus10007662.g ID=Lus10007662.BGIv1.0 annot-version=v1.0 ATGGATCGCAGCCGCCCCGCCTCACGGCCCTCTGTTCCTCTCATCGCGACGTGTGGCGGTGGAGTGACGGTGAATCGTGCAGCGGAGGCGGAGGAGGAGG AAGGCGGTGTTTGGGAGAGCTTCGTGAATTTGCCTAATTTTATCTCTGTCAGTCGTTTGGTGTCCGGGCCTTTCCTTGGATGGATGATTGCTAATGAGAT GTATTCCGCTGCATTTGTTGGCTTGGCAATCTCTGGAGCTAGTGATTGGCTTGATGGTTATGCTGCAAGAAAGATGGGGATAAATTCTGTAGTTGGTTCT TATCTTGATCCTCTTGCTGACAAGGTTCTTATTGGATCAGTTGCTGTAGCCATGGTTCATATGGGTCTTTTACACCCTGGACTAGTCGGATTAGTTTTAT TTCGTGATGTCGGACTGGTTGCTGCATCACTATATCATAGAGCTAACAGCCTGGGTTGGAAGTGGAATAGCTGGTCTGAATTCGTAAACCTCAACGGATC TGGTGCCGAGAAGATCCAGCCTCTATTCATAAGCAAGGTGAATACAGTGTTCCAGCTTCTTTTGGTGGCGGCAGCCCTTCTTCAACCAGAGTTTGGAACA GAGCAGACGCTAACATACGTAACATACTTGAGCTGGCTGGTGGCTTCGACGACAGCAGGTTCCACTGCAGCATACGGATTGAAATACTTCAACAACAGAT CCTCGTTGCTGGCTAGGAAGTAG
AA sequence Show only first row Show all	>Lus10007662 pacid=23140294 polypeptide=Lus10007662 locus=Lus10007662.g ID=Lus10007662.BGIv1.0 annot-version=v1.0 MDRSRPASRPSVPLIATCGGGVTVNRAAEAEEEEGGVWESFVNLPNFISVSRLVSGPFLGWMIANEMYSAAFVGLAISGASDWLDGYAARKMGINSVVGS YLDPLADKVLIGSVAVAMVHMGLLHPGLVGLVLFRDVGLVAASLYHRANSLGWKWNSWSEFVNLNGSGAEKIQPLFISKVNTVFQLLLVAAALLQPEFGT EQTLTYVTYLSWLVASTTAGSTAAYGLKYFNNRSSLLARK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04870		CLS	cardiolipin synthase (.1)		Lus10007662 [exp]	0	1
AT1G18680			HNH endonuclease domain-contai...		Lus10003480 [exp]	86.5	0.8297
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10038903 [exp]	127.0	0.7971
AT3G02280			Flavodoxin family protein (.1)		Lus10017589 [exp]	151.3	0.7899
					Lus10003602 [exp]	215.7	0.7847
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10025416 [exp]	246.4	0.7845

Compare expression of checked genes

Lus10007662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.