Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21790 402 / 1e-142 ATTOM1, TOM1 tobamovirus multiplication 1 (.1) AT2G02180 310 / 6e-106 TOM3 tobamovirus multiplication protein 3 (.1) AT1G14530 278 / 1e-93 THH1 TOM THREE HOMOLOG 1, Protein of unknown function (DUF1084) (.1), Protein of unknown function (DUF1084) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018348 [exp] 493 / 2e-178 AT4G21790 462 / 2e-166 tobamovirus multiplication 1 (.1) Lus10006770 [exp] 478 / 2e-172 AT4G21790 463 / 1e-166 tobamovirus multiplication 1 (.1) Lus10020054 [exp] 473 / 3e-170 AT4G21790 457 / 2e-164 tobamovirus multiplication 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018100 [exp] 433 / 1e-154 AT4G21790 463 / 2e-166 tobamovirus multiplication 1 (.1) Potri.011G001000 [exp] 423 / 6e-151 AT4G21790 427 / 2e-152 tobamovirus multiplication 1 (.1) Potri.010G097900 [exp] 308 / 4e-105 AT2G02180 431 / 1e-153 tobamovirus multiplication protein 3 (.1) Potri.008G144400 [exp] 306 / 1e-104 AT2G02180 425 / 3e-151 tobamovirus multiplication protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [flax] [poplar] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Lus10007663 pacid=23140330 polypeptide=Lus10007663 locus=Lus10007663.g ID=Lus10007663.BGIv1.0 annot-version=v1.0 ATGACGAGACCGCTACTGCCTTTACCGGCGATGGAGTTCGTCGGATTAGCTGGCAGCTGGTGGAATGAGATCAACGAGTCGACTCAGTGGCAGGACGGGA TTTTCTACACACTTTCCGGTGCTTTCTCTCTCGTCTCGTTGATTGCCTTGATTCAACTGATTAGGATTGAACTGAGAGTGCCGGAGTATGGCTGGACCAC TCAGAAAGTTTTCCACCTTATGAACTTCATTGTTAATGGAGTACGAGCCGTCGTGTTTGGATTTCACGGCCAAGTGTTCGGTTTGCATCCCAAGGTCCTT ACATTGCTAGCGTTAGATTTACCAGGGTTGCTGTTCTTCTCTACGTATACCCTTCTAGTACTGTTTTGGGCTGAGATATATCATCAGGCAAGGAGTTTGC CAACAGATAAGCTAAGGGTTTTCTACATCTCAACAAATGGTGTAATCTACTGCATACAGGCAATCATCTGGGTTTACCTATGGGTTCATGACACCAGTGT TGTGGAGCTGATAGGGAAGATATTCATTGCAGTGGTGTCAATTGTTGCTGCATTAGGGTTTCTGCTCTACGGAGGAAGACTGTTTTTCATGCTCAGACGC TTCCCGATTGAATCCAAGGGGAGAAGGAAGAAGCTCCATGAGGTTGGGTCAGTTACAGCAATTTGTTTCACATGCTTCCTTATCAGATGTTTTGTGGTCC TTCTATCTGCTTTCGACAAAGATGCATCTCTTGAAGTTTTGGATCATCCGGTTTTGAACTTGATCTATTACACGCTGGTAGAGATCCTACCCTCAGCTTT GGTCCTCTTCATCCTCCGAAAGTTGCCTCCGAAACGAGTATCAGCTCAGTACCATCCAATCCGCTAG
AA sequence Show only first row Show all	>Lus10007663 pacid=23140330 polypeptide=Lus10007663 locus=Lus10007663.g ID=Lus10007663.BGIv1.0 annot-version=v1.0 MTRPLLPLPAMEFVGLAGSWWNEINESTQWQDGIFYTLSGAFSLVSLIALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHGQVFGLHPKVL TLLALDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRVFYISTNGVIYCIQAIIWVYLWVHDTSVVELIGKIFIAVVSIVAALGFLLYGGRLFFMLRR FPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVLLSAFDKDASLEVLDHPVLNLIYYTLVEILPSALVLFILRKLPPKRVSAQYHPIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10007663 [exp]	0	1
AT4G33740			unknown protein		Lus10020507 [exp]	2.4	0.9512
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	3.5	0.9505
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	3.5	0.9535
AT1G50510			indigoidine synthase A family ...		Lus10009716 [exp]	5.9	0.9307
					Lus10015758 [exp]	6.7	0.9381
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	8.5	0.9431
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	10.4	0.9222
AT5G37480			unknown protein		Lus10013637 [exp]	12.6	0.9156
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	13.4	0.9329
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10015075 [exp]	14.1	0.8944

Compare expression of checked genes

Lus10007663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.