Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04860 345 / 5e-122 DER2.2 DERLIN-2.2 (.1) AT4G21810 342 / 1e-120 DER2.1 DERLIN-2.1 (.1) AT4G29330 108 / 1e-28 DER1 DERLIN-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018347 [exp] 395 / 2e-141 AT4G04860 446 / 2e-161 DERLIN-2.2 (.1) Lus10006771 [exp] 374 / 3e-133 AT4G04860 437 / 6e-158 DERLIN-2.2 (.1) Lus10020053 [exp] 374 / 4e-133 AT4G04860 437 / 1e-157 DERLIN-2.2 (.1) Lus10034990 [exp] 104 / 4e-27 AT4G29330 347 / 2e-121 DERLIN-1 (.1) Lus10012934 [exp] 99 / 9e-25 AT4G29330 347 / 2e-120 DERLIN-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000900 [exp] 354 / 2e-125 AT4G04860 410 / 5e-147 DERLIN-2.2 (.1) Potri.004G018200 [exp] 352 / 2e-124 AT4G04860 410 / 7e-147 DERLIN-2.2 (.1) Potri.004G233200 [exp] 94 / 4e-23 AT4G29330 293 / 4e-100 DERLIN-1 (.1) Potri.004G233100 [exp] 94 / 5e-23 AT4G29330 293 / 8e-100 DERLIN-1 (.1) Potri.006G153000 [exp] 90 / 1e-21 AT4G29330 355 / 7e-125 DERLIN-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF04511 [flax] [poplar] DER1 Der1-like family
Representative CDS sequence Show only first row Show all	>Lus10007664 pacid=23140276 polypeptide=Lus10007664 locus=Lus10007664.g ID=Lus10007664.BGIv1.0 annot-version=v1.0 ATGGCTCAGGCAGTTGAGGAATGGTATAAGCAGATGCCTGTCATCACTCGTTCGTACCTCACAGCGGCCATCGTCACCACCATCGGCTGCTCCCTTGATA TAATAGCCCCTTCCAATCTGTACTTGAATCCAAGGCTTGTGGTGCAGAAGTATGAGTTTTGGCGCCTCGTCACCAACTTCCTCTACTTCCGGAAAATGGA TTTGGACTTCATGTTCCACATGTTCTTCCTTGCACGGTACTGCAAGCTTCTGGAGGAGAACTCCTTCAGAGGAAGGACAGCAGATTTCTTCTATATGATT CTCTTTGGTGCATCTGTTTTAACCGGCGTTGTTCTTGTTGGTGGGATGATCCCATACCTGTCCGAGTCATTTGCTAAAATCGTGTTCCTCGGCAACTCCT TGACTTTCATGATGGTTTATGTCTGGAGCAAGCAAAATCCTTTTATCCATATGAGTTTCTTGGGGCTGTTCACTTTCACAGCAGCTTATTTACCATGGGT TAATGTTGTTCCCCGGATGACTGGTCGACGGCCCCTGCGAACCCCGTCATTCATTAGAGCTTTGTTCGCAGACGACCCTGTTGTGGTAGCACGACCGGCC AATGTAAGATTTGCGCAGCCAGCTGCACCAGAGCTCCACCAGGATTGA
AA sequence Show only first row Show all	>Lus10007664 pacid=23140276 polypeptide=Lus10007664 locus=Lus10007664.g ID=Lus10007664.BGIv1.0 annot-version=v1.0 MAQAVEEWYKQMPVITRSYLTAAIVTTIGCSLDIIAPSNLYLNPRLVVQKYEFWRLVTNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYMI LFGASVLTGVVLVGGMIPYLSESFAKIVFLGNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVNVVPRMTGRRPLRTPSFIRALFADDPVVVARPA NVRFAQPAAPELHQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10007664 [exp]	0	1
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	2.2	0.8660
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	3.5	0.8544
AT3G17900			unknown protein		Lus10013273 [exp]	5.9	0.8337
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	8.1	0.8213
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	9.2	0.8203
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	9.8	0.8406
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	13.1	0.8246
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	13.5	0.8138
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10040742 [exp]	14.1	0.8228
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	20.8	0.7979

Compare expression of checked genes

Lus10007664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.