Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21820 1028 / 0 binding;calmodulin binding (.1) AT4G28710 53 / 2e-06 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT1G04160 52 / 3e-06 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT2G20290 50 / 1e-05 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT5G43900 48 / 6e-05 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043153 [exp] 58 / 7e-08 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 56 / 3e-07 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G017500 [exp] 932 / 0 AT4G21820 815 / 0.0 binding;calmodulin binding (.1) Potri.002G254300 [exp] 52 / 4e-06 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.006G220000 [exp] 48 / 6e-05 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.005G089200 [exp] 45 / 0.0003 AT3G19960 1896 / 0.0 myosin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10007665 pacid=23140280 polypeptide=Lus10007665 locus=Lus10007665.g ID=Lus10007665.BGIv1.0 annot-version=v1.0 ATGGAGTTTAACGAAAATTCACGTTCGACGCCGGCACCACGCTCTTCTGCATTTCCCGACTCGTCCTCACTTCTCAGAGACGTCTCCAATTTGAGAACTC CGAGAAGCATCGCTCCGACGAAGAATTTCGCTACTCCTGTCTCCACCTCCCGTTTCTTCACTGCCGCGAAGCAAACACCTCGCTCATTCGCATCTTCCAT CCGCCATCACCCTAACTATCGGCCGTCGACGAATTTGAAGAGGAAAACGGCCACCGCGCGACGAATTAAGGCGTTCGAGTTCGAACAGTCGCAGTCCTCA AGGAAGGCTCAGATCAGGAAAGAAAAGTCGCTCAAATCTCTAGCTAAGTCGCTCACTACTTGGCTCAATTTCCTGTTTCAGAATCCCACTGCATGTGGCT GCGATTCGGCTCTCGGCCGAGAGCTAGATGAAGGGGTTGTAGGTCTAGGGAAGAGGGAAGTTCGACGCCGGCCTGGAAATGATGGGAATGTTGAAGTGGA TGCCACGTGGCGGTGTCCTAAGCGGCGAAGGGATTCAGTGTGGGGCCGAGGTGATGGAGTGGTGATCAAGCACCAGCAAGTGGCCTTGATTAGCAAAAAG TACTCAAAGCTGATCAGTTCCTTGGATGGCTTATGCAGTTTCGATGATCTTCACCAGAGGATGCGACTCCATTTGAGTTCGAGCAGCTGTATGGAGATTT ACGACATCATGACTCTGGTTATGAAGAATATTGATAATGGGAGGTTGAAAATGAAGTCGCATTGTCCAATTGTGACCGACTTCGGAATGAAAGAGAAGGC TACACGAATACTTATGTGTTACAATCCAATTTGGTTACGGATTGGGTTACATATCATCTTTGGAGGCGATACCTTGTTGCCTGGTGAAGATGTTAACTCT GAGCAGGAACTTGCCTTCTTGAAGACAATGATTGAGAAGCAGTTTTTCTCTCACGCTGGATTGGCGAAAGCATATGCTTACAACAAAATGGTTGATAGGT TATATAGACCTGGTTACTATGAAAGTTTAGGAAATATCATATTGAAAAGGTTTTTGCTGCTTGTTCTTACGCTTGACAGAGCTAAGTCGATCTCTGCCCT TCCTTTAGCATATGGTATTGATGGGATTGATGGTGGCTCTCCTCTGCTCTTCGAGGTTCAATCTAATATCAAGTCTAGTGCTCAACTTATAAATGATTTC TTGTCGCCTGAAGTAATGCATGGAGAAGGTAACCTGCTTGCTCATTTAGTCATAATAGGCTACAAGGTCTCCTATCAGCAGTCTCTCTTGGTTGAGTACG AGTTCAGAGTGACAGATTTATTTGCCGACTTCCAAGATGGAATGCGGCTGTGTAGAGCCATTCAGCTTCTGAAAAATGACTCCTCGATTCTCTTGAAAAT GGTCACTTCTTCAGATTGTCGGAAGAAAAGAGTAACTAATTGTGGCATTGCCCTAAAATGGCTCAAGAACTTGGGCGTAAGTTTGTTGGATGAAGATGGG ATAGAAATCACTGAAGATGATGTTGCTACTGGAGATAAAGAGCTAACAATTTCATTGCTGTGGAACATGTTTGTTCACTTACAGCTTCCCCTTTTGGTCA ACAAAACAATTTTGCTAGAGGAAACTGTTGGAATTCGTGGCACTCAAATGGAACTCACAAGCAGTACCACTATGGGTTCCTCTACATTGGAGTTGCTGCT GGATTGGTTAAAGGCAGTCTGCGCTAAGTATGATCATAAGATTGAGAATTTCTTTTCACTAGTTGATGGAAGAGCCATATGGTGTTTGCTGGACTACTAC TTCCGCAAGGAACTTTCTTGTTCTCAGTCCTCTAAGGACTCTTGTAGAGGTAGAGGTAGGGAGTCAATTATGTCTGCTAATGATTCCACCGACACATTCC ACAACTTCATGCTGTCACAGAATCTAGCTACATTGCTGGGTAGTTTTCCCGAGGTGCTGCATACCAGTGAGCTACTTGAACATAGTGGTGCAATTAGTGA CAAAAGTGTCATGATTCTAGTTGTCTTCCTTTCATCTCAGTTGGCTGCAAAAAAAGCAGTGGATCAATTGAATTTTCATAAGCTACTGGGTTGCAATTGT CAAAGTCTGGTGAGAAGGCATTCGCATGTTGAAAAGTCCTTCATAACTTCGCAATTGGAGATGAATCAAGAACAAACACGTGAACATAGTGTTGAGGTTT GTGTAGATGCTACAAGTAACTTTATGTCTATTAGGGCTTGGTGGCAAGATATGGCAGAAAGGAACAGTGAGTTTGTTGGACCTTCAATGTTCTTGAAAGG TTACCCAACTGGAACAAGGAATGTTGAAAGTGGAGAAGCTAAACAGGAATGTGCAGCAATAGTCATACAGTCAAAATTCAGGAAGTTCAGAGAGCATCGT AAATATGTGCGAGTTAAAAATGCTATTTCAGTCTTGCAAAGCATGCTTCGGGCATGGATATTGGCAAAGAAGGAATTGGCCTCTCAAGAAGTTGCTGCTA TCACAGTTCAGGGCTTTGCACATGCAACATCAAGAATTCAACGGTATTACAGGTGCCTTCGGTGTTTGAGAGTCTTTCAACATCTTGAAACCATCCAGTC GGCCATTCACGTTCAATCATTTGTACGTGGATGGCTCGCTCGGAGAGAAACTGAGAGACGTAAATACCTATTGTGCGTCCTCCAAAAATATTGTCGGGGT TGGTTGATGAGGAAACGCTTTTTATGCCAAAAACAAGCTGTGACAAAGATTCAGAGCGCTATTCGCTGTCTCAACTGTTGCAAAGCCTTGCGTGCAAAGG AAGTTACCGCCATTGAAATTCAACGGTTTGTCAGGGGACGGATAACTCGCAAAAGGCTTTTGGGTGCATCTGGTTCCTATGCTGCTAGCTCCGTTTTAAG AGCATGCCCATGGAGTTCTGAGTTGCAAATAGTTATGTCTTCCGTTGTGAAGTTGCAAAGGTCATGGAAGGGTACTTTACTGCACAGGCTAAAGACGAAT GCGGCAATTGTTATACAATCTCATGTCCGAGTTTGGATTTCCAAGCAAAGGTCCTCTAGAAAACGGCACCATGTTATTGTGATTCAATCACATTGGAGAG GCTACCTTGCAAGGAAGGAGTCAAAAGGGCAGTTAGTGGACTTACGCCTGAGAATGCAGAAATCTGCTAGAAATGTGGATGACAGAATGCGTATTATGAA CAAGCTTAAAGTCGCAGTTTCTGAGCTACTAAGCATGAAGAGCATGAGTAACGTTCTCCATATTTGCCAAACTTTGGGTAAGTTCCTTCGTTTCAGTAGT GAAGTCCCAATTTTTCCCCCTTACCCTTACCACAGCTTAAAACCTCTGCTTTCTTCACAAGATCGGACAACACAGCACTCGCAAAAATGTTGCGAGGAGC TCGTTGGAGCTGGGGCAATCGCCATGCTACTGAAGCTGATGCGGTCGGTGAGTCGTAGCATACCTGACCAAGAGGTTCTAAAGCACGCACTATCAACTCT CCGGAACCTTGCCCGATACCCACACTTGGTCGAAACGCTAATCGAAAGCACTGGATCAGTTGACATACTATTCATGGAGTTTCTCAAGAACAAGGATGAA GGATACTTCATTGCTGCCGAGGTTATAAGAAAGATGTGCTTGAATAGCAAAGGCATTGAGACCATTCGCAGGTCGCCTGCACTCTTAAAAAGATTGGATA GCTTTGTGGAGGACATGAAGAGAAAGAAGGTTTCATCAGAGATGAGGAATCCACGGGGTGCATCAGCCGAGACGAGGAGAGACGTGGAGAAGAAGAGATT ACGAGAAGCCGCTGAACTTCTCAAGCTTATAAGAAGCAATTTGTAG
AA sequence Show only first row Show all	>Lus10007665 pacid=23140280 polypeptide=Lus10007665 locus=Lus10007665.g ID=Lus10007665.BGIv1.0 annot-version=v1.0 MEFNENSRSTPAPRSSAFPDSSSLLRDVSNLRTPRSIAPTKNFATPVSTSRFFTAAKQTPRSFASSIRHHPNYRPSTNLKRKTATARRIKAFEFEQSQSS RKAQIRKEKSLKSLAKSLTTWLNFLFQNPTACGCDSALGRELDEGVVGLGKREVRRRPGNDGNVEVDATWRCPKRRRDSVWGRGDGVVIKHQQVALISKK YSKLISSLDGLCSFDDLHQRMRLHLSSSSCMEIYDIMTLVMKNIDNGRLKMKSHCPIVTDFGMKEKATRILMCYNPIWLRIGLHIIFGGDTLLPGEDVNS EQELAFLKTMIEKQFFSHAGLAKAYAYNKMVDRLYRPGYYESLGNIILKRFLLLVLTLDRAKSISALPLAYGIDGIDGGSPLLFEVQSNIKSSAQLINDF LSPEVMHGEGNLLAHLVIIGYKVSYQQSLLVEYEFRVTDLFADFQDGMRLCRAIQLLKNDSSILLKMVTSSDCRKKRVTNCGIALKWLKNLGVSLLDEDG IEITEDDVATGDKELTISLLWNMFVHLQLPLLVNKTILLEETVGIRGTQMELTSSTTMGSSTLELLLDWLKAVCAKYDHKIENFFSLVDGRAIWCLLDYY FRKELSCSQSSKDSCRGRGRESIMSANDSTDTFHNFMLSQNLATLLGSFPEVLHTSELLEHSGAISDKSVMILVVFLSSQLAAKKAVDQLNFHKLLGCNC QSLVRRHSHVEKSFITSQLEMNQEQTREHSVEVCVDATSNFMSIRAWWQDMAERNSEFVGPSMFLKGYPTGTRNVESGEAKQECAAIVIQSKFRKFREHR KYVRVKNAISVLQSMLRAWILAKKELASQEVAAITVQGFAHATSRIQRYYRCLRCLRVFQHLETIQSAIHVQSFVRGWLARRETERRKYLLCVLQKYCRG WLMRKRFLCQKQAVTKIQSAIRCLNCCKALRAKEVTAIEIQRFVRGRITRKRLLGASGSYAASSVLRACPWSSELQIVMSSVVKLQRSWKGTLLHRLKTN AAIVIQSHVRVWISKQRSSRKRHHVIVIQSHWRGYLARKESKGQLVDLRLRMQKSARNVDDRMRIMNKLKVAVSELLSMKSMSNVLHICQTLGKFLRFSS EVPIFPPYPYHSLKPLLSSQDRTTQHSQKCCEELVGAGAIAMLLKLMRSVSRSIPDQEVLKHALSTLRNLARYPHLVETLIESTGSVDILFMEFLKNKDE GYFIAAEVIRKMCLNSKGIETIRRSPALLKRLDSFVEDMKRKKVSSEMRNPRGASAETRRDVEKKRLREAAELLKLIRSNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21820			binding;calmodulin binding (.1...		Lus10007665 [exp]	0	1
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	3.7	0.9590
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	5.6	0.9619
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	5.7	0.9579
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10009771 [exp]	6.3	0.9506
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	8.7	0.9563
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	10.5	0.9552
AT1G19080		PSF3, TTN10	TITAN 10, Partner of SLD5 3, G...		Lus10030406 [exp]	12.2	0.9223
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	12.6	0.9522
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	13.3	0.9454
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	14.5	0.9539

Compare expression of checked genes

Lus10007665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.