Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21870 112 / 6e-33 HSP20-like chaperones superfamily protein (.1) AT1G53540 77 / 1e-18 HSP20-like chaperones superfamily protein (.1) AT1G07400 74 / 3e-17 HSP20-like chaperones superfamily protein (.1) AT1G59860 71 / 4e-16 HSP20-like chaperones superfamily protein (.1) AT5G12030 66 / 2e-14 AT-HSP17.6A heat shock protein 17.6A (.1) AT5G37670 62 / 7e-13 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT5G12020 61 / 2e-12 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT3G46230 59 / 1e-11 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT2G29500 58 / 2e-11 HSP20-like chaperones superfamily protein (.1) AT5G59720 57 / 4e-11 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018346 [exp] 238 / 1e-82 AT4G21870 118 / 5e-35 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 69 / 4e-15 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 69 / 6e-15 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 62 / 6e-13 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 60 / 5e-12 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 58 / 3e-11 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 57 / 5e-11 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 57 / 8e-11 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 57 / 8e-11 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G001600 [exp] 131 / 3e-40 AT4G21870 155 / 1e-49 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 75 / 7e-18 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 75 / 8e-18 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 74 / 3e-17 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 74 / 3e-17 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 73 / 4e-17 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 72 / 1e-16 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 71 / 2e-16 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 70 / 8e-16 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 69 / 2e-15 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10007666 pacid=23140282 polypeptide=Lus10007666 locus=Lus10007666.g ID=Lus10007666.BGIv1.0 annot-version=v1.0 ATGGATTTCTCTCCCAATCACTCGTCTCCATGGCAATATCTCATTGCTCCCGCCGGCGGAGTTCCCCGTTCCTTAGCTGTCCCTGCCAATTACGTCCACT GGACTCAGAACCCCGACTCCCACATTTTCTCTGCCGACATCCCCGGGGTGAGGAAAGAGGATATAAGAGTGGAGGTGGAGAACTCCAGATATCTGATTAT CCGGACCGACGGCTCAAATATCCCGCCGGAGAGGAGTTTCATGAGGAAATTCCGGCTGCCGGACTTGGTCTACGTGGACGGGATATCAGCTGCGTACGAA GATGGTGTGTTGAAGGTCACCGTCCCTAGAGCTTCCAGAAGGATAGGAGTCTTCATTCACCCCGCTGACGTGCCGGCAAGATTGGACCGTCTGGCTCCGG CTGCTTGA
AA sequence Show only first row Show all	>Lus10007666 pacid=23140282 polypeptide=Lus10007666 locus=Lus10007666.g ID=Lus10007666.BGIv1.0 annot-version=v1.0 MDFSPNHSSPWQYLIAPAGGVPRSLAVPANYVHWTQNPDSHIFSADIPGVRKEDIRVEVENSRYLIIRTDGSNIPPERSFMRKFRLPDLVYVDGISAAYE DGVLKVTVPRASRRIGVFIHPADVPARLDRLAPAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	0	1
AT2G14080			Disease resistance protein (TI...		Lus10023330 [exp]	2.0	0.8371
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10012524 [exp]	2.0	0.8595
					Lus10007688 [exp]	3.0	0.7717
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016498 [exp]	4.4	0.7426
AT5G36930			Disease resistance protein (TI...		Lus10023329 [exp]	4.6	0.7852
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	4.9	0.7734
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10022344 [exp]	5.5	0.8214
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	8.7	0.7303
					Lus10029487 [exp]	11.4	0.7005
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014219 [exp]	15.5	0.7030

Compare expression of checked genes

Lus10007666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.