Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007667 pacid=23165672 polypeptide=Lus10007667 locus=Lus10007667.g ID=Lus10007667.BGIv1.0 annot-version=v1.0 ATGTGTGCAGGCAACAGTTGCTCCTACTCATATGTGGAAGTGATCAAGGATGGCTCTGAAGGCAATGTGGCTGAGTCTCCATTGCGAGAGGAGCTTGCAC CTTCATCTGCCCTTGTCTCACTGACTGGAGGGGGAGGGGTTGACATTGCTCAACCTTCTGAAGGAGAGGTAATAGATTCCCCTCAACAAGCGAGTCTAAT CGAGGCCTCTACAGAGGTGGAGACAGAGAGCCCTAGAAGTGCTGAATATATGGAGACACTTGCAAAAACGATTGTGGATATCGCTGTTACAGTTGATGCT GACACTAAACCCTCCAAATCTGAAGGCTACCACTTTGGCTGA
AA sequence Show only first row Show all	>Lus10007667 pacid=23165672 polypeptide=Lus10007667 locus=Lus10007667.g ID=Lus10007667.BGIv1.0 annot-version=v1.0 MCAGNSCSYSYVEVIKDGSEGNVAESPLREELAPSSALVSLTGGGGVDIAQPSEGEVIDSPQQASLIEASTEVETESPRSAEYMETLAKTIVDIAVTVDA DTKPSKSEGYHFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007667 [exp]	0	1
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	3.5	0.9035
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10038703 [exp]	4.0	0.8859
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	4.9	0.8718
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	5.0	0.8810
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	5.5	0.8895
AT1G10890			unknown protein		Lus10043141 [exp]	5.9	0.8767
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10014468 [exp]	6.0	0.8550
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10002649 [exp]	7.1	0.8681
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	8.7	0.8481
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	10.0	0.8907

Compare expression of checked genes

Lus10007667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.