Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32650 709 / 0 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT2G26650 502 / 1e-168 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT5G46240 476 / 7e-161 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 458 / 9e-154 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32500 456 / 9e-151 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G25600 451 / 1e-148 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G22200 425 / 2e-139 AKT3, AKT2/3 potassium transport 2/3 (.1) AT3G02850 299 / 2e-91 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 290 / 6e-88 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT1G15990 88 / 5e-18 ATCNGC7 cyclic nucleotide gated channel 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037904 [exp] 922 / 0 AT4G32650 706 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Lus10043298 [exp] 489 / 4e-163 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 488 / 6e-163 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 480 / 8e-160 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10042831 [exp] 474 / 5e-159 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10028128 [exp] 471 / 4e-158 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10002529 [exp] 467 / 6e-155 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 440 / 4e-150 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10015474 [exp] 450 / 2e-148 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035500 [exp] 860 / 0 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.006G245000 [exp] 844 / 0 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 816 / 0 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G071400 [exp] 500 / 1e-167 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.004G132200 [exp] 491 / 1e-165 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.018G031600 [exp] 482 / 2e-160 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 480 / 7e-160 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 452 / 9e-150 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.017G135400 [exp] 293 / 4e-89 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 288 / 8e-87 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007670 pacid=23165676 polypeptide=Lus10007670 locus=Lus10007670.g ID=Lus10007670.BGIv1.0 annot-version=v1.0 ATGTCAGAAACAAGGTCGCCGTTGCCTCTGCTGTTCCGGAGGAGATCCAGTGGTGAAGTCCTCAAGAATCTGGCCTCAGTTTCAAGCAGCCTGTTACCAG CTTTTGGAACCGTGGTTGATGAAGGATACTTGCAGCTCAAGCAATTCATCATAGCACCTTATGACCACAGATACAGGCGGTGGCAAACTTTCCTGGTGGT GCTGGTGGTGTACTCGGCATGGGCATCAATATTTGAGCTAGCGTTCAAGAGAATAGCGACAGGGACACTCTTGTACATCGACTTGGCGGTGGATGCTTTC TTTTCCATTGACATTGTCCTCACTTTCTTTGTCGCTTATCTTGATACAACCACCTATCTTCTCGTTGATGATCAAAAGAAAATTGCTACAAGGTATCTCA CTAAGCCATGGTTCGTAATGGACGTGGCCTCCACCCTACCGTTTCAGTTCATCTACAGAATCTTCACAGGCGGAATGAACCACCAAGAAGTATTTGGTTT CCTCAATTTGCTTCGCCTCTGGAGACTCCGCCGTGTCAGCGAAATCTTCAGCAGATTGGAGAAAGACACACGGTTCAGCTACTTCTGGACTAGGTACCTG AAGCTAATTGGGGTTACGCTGTTAGCTGTGCACTCAGCAGGATGCTTCTACTACTGGCTGGCATACCATCATCCCGTTGAAGCTGAAACCTGGATTGGTT CTGAGGTGGACAATTTCAAGGAAAGAAGCATATGGCTGGGATACACTTACTCCCTCTACTGGTCAATTGTCACCCTCACTACAGTTGGTTACGGAGACCT GCATGCAGTAAACACCGGAGAGAAGATTTTCAACATGCTTTATATGCTATTTAACATTGGTCTTACTGCTTACCTAATCGGGAACATGACCAATCTCGTT GTCCACAGTGCTGTTCGAACTTTTGCAATGAGAGATGCCATCAATGAAATACTGAGGTATGCAACAAAGAATCGACTTCCGGAAGGTTTGAAAGAGCAAA TGCTGGCACACATGCAACTCAAGTTCAAAACAGCAGAGCTAAAACAAGAGGAAGTTCTGGAGGACCTTCCCAAGGCCATAAGATCTAGCATAGCTCAGCA TCTATTTCGTAACACGGTTGAGAAGGCTTACTTGTTCAATGGAGTCTCTGAAGACCTTGTTACTCAGCTGGTGTCAGAGATGAAAGCCGAGTATTTCCCG CCGAAAGTTGAAATCATACTGCAAAACGAGATCCCTACAGATTTCTATGTCCTCATTTCTGGAGCAGTGGATGTGCTGACCTACAAGAATGGTACAGAAC AGTTTCTGTCAAAACTAGGAGCTGCAGATATGGCTGGAGAGATTGGGGTACTATTCAACGTTCCACAGCCTTACATTGTGAGGACTAAGAGGCTTTCCCA GGTCGTCCGCATCAGTCATCAGCAGTTCAAACAAATAGTGCAGCCGAACAGTGTGGATGGCAAGAGGATCATCTCCAACTTCAATCAGTACCTGAAGGAA TTGAAAACCGATATGCGAGAAGAACTGCCTTTTCTGACCGAGTCACTAACACAAATGGATTTAGAGCAAAGAACCCCAAATGATGATCAAGGTCCTCAAG CACAAGACTCCCCAAAAGATGAAAGTACAGAAGGAACTCATGAAACATCTACTCTGTTATCTAGCAAGTTCCCTGTACGGGTAATTATCCATGGATATGA TCCGAAGGAACTTCAATTGGAGCACGATACATTCGGGAAGCTAATACATCTACCAGATACACTTGAGGAACTTTTCAGATTGGCAGGTAAAGCCACATTA TGA
AA sequence Show only first row Show all	>Lus10007670 pacid=23165676 polypeptide=Lus10007670 locus=Lus10007670.g ID=Lus10007670.BGIv1.0 annot-version=v1.0 MSETRSPLPLLFRRRSSGEVLKNLASVSSSLLPAFGTVVDEGYLQLKQFIIAPYDHRYRRWQTFLVVLVVYSAWASIFELAFKRIATGTLLYIDLAVDAF FSIDIVLTFFVAYLDTTTYLLVDDQKKIATRYLTKPWFVMDVASTLPFQFIYRIFTGGMNHQEVFGFLNLLRLWRLRRVSEIFSRLEKDTRFSYFWTRYL KLIGVTLLAVHSAGCFYYWLAYHHPVEAETWIGSEVDNFKERSIWLGYTYSLYWSIVTLTTVGYGDLHAVNTGEKIFNMLYMLFNIGLTAYLIGNMTNLV VHSAVRTFAMRDAINEILRYATKNRLPEGLKEQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFRNTVEKAYLFNGVSEDLVTQLVSEMKAEYFP PKVEIILQNEIPTDFYVLISGAVDVLTYKNGTEQFLSKLGAADMAGEIGVLFNVPQPYIVRTKRLSQVVRISHQQFKQIVQPNSVDGKRIISNFNQYLKE LKTDMREELPFLTESLTQMDLEQRTPNDDQGPQAQDSPKDESTEGTHETSTLLSSKFPVRVIIHGYDPKELQLEHDTFGKLIHLPDTLEELFRLAGKATL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10007670 [exp]	0	1
AT2G22850	bZIP	ATBZIP6	basic leucine-zipper 6 (.1.2)		Lus10019273 [exp]	1.7	0.9489
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	6.5	0.9431
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	8.8	0.9430
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	16.2	0.9385
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	18.2	0.9354
AT2G20080			unknown protein		Lus10034960 [exp]	18.5	0.9174
AT1G62560		FMOGS-OX3 ,FMO ...	flavin-monooxygenase glucosino...		Lus10024609 [exp]	21.0	0.9289
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	23.8	0.9302
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	24.7	0.9337
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	25.2	0.9314

Compare expression of checked genes

Lus10007670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.