Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13260 487 / 4e-171 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT5G25620 477 / 5e-167 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT4G28720 465 / 3e-162 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT1G04180 456 / 7e-159 YUC9 YUCCA 9 (.1) AT5G43890 447 / 3e-155 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT2G33230 439 / 4e-152 YUC7 YUCCA 7 (.1) AT1G04610 438 / 1e-151 YUC3 YUCCA 3 (.1) AT5G11320 416 / 3e-143 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 415 / 1e-142 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G21430 327 / 2e-108 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011093 [exp] 474 / 7e-166 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 472 / 2e-165 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10022851 [exp] 458 / 1e-159 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 456 / 1e-158 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10023695 [exp] 443 / 2e-153 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 437 / 2e-151 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10013125 [exp] 433 / 6e-150 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 426 / 3e-147 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10024023 [exp] 405 / 5e-139 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036800 [exp] 533 / 0 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 529 / 0 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 472 / 3e-165 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.008G174600 [exp] 447 / 3e-155 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 431 / 2e-147 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.007G028200 [exp] 424 / 2e-146 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 421 / 3e-145 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 408 / 4e-140 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.005G111800 [exp] 323 / 3e-107 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1) Potri.016G003300 [exp] 320 / 3e-106 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10007671 pacid=23165689 polypeptide=Lus10007671 locus=Lus10007671.g ID=Lus10007671.BGIv1.0 annot-version=v1.0 ATGAATTTCATGATGGAAATCGCAGGCAAGCAGGTTCACGACCCACTCTACGCATCACCACCAACAACAATGCCGCCGAGGAGGGAGATCGTGATGGGCC CTGTCATCGTCGGAGGTGGGCCCTCTGGTTTGGCGACGGCCGCCTGCCTAAAGGAGAAAGGAATCCCCAGCGTGATACTAGAGAGGTCAAACTGCATAGC TTCTTTGTGGAAGCACAAAACATACGACAGGCTCTGCCTCCACTTGCCCAAGCAATTCTGCCAGCTACCCAGGATGGATTTCCCTGAGAATTACCCGGAG TACCCTTCCAGGAGGCAATTCGTCGATTACTTGAATTCCTACGTTGAGAAATTCGACCTCAGACCCAGGTTTAACGAGAGCGTGGAGAGCGCAGAGTACG ACAAGGTGGATGGTCTGTGGAAGGTGAAGACTATTAGACGTGTTGAGGAGGCAGAGGAGCAGGCGGGGACGTCAACGACGGAGTACCTGTGCAGGTGGCT GGTGGTGGCGACGGGAGAGAATGCGGAGGCGGTGGTGCCGGAGATACAAGGGATAAGGGAGTTTGTTGGGGAAGTGAAGCATTCGAGCTTGTATAAGTGC GGGGAGGAGTATAGTGGGAAACGAGTGTTGGTGGTCGGGTGTGGAAATTCTGGAATGGAGGTTTCTTTGGATCTTTCCAATTTCAATGCTCTTCCTGCTC TCGTTGTCCGCAATACATATAATAAGATTGGTGGTGGGGATGATGATGTTGATTATGATCATGATCAGGTGCATGTTTTGCCGAGGGAGATGCTGGGAAA GTCTACTTTCGGTTTATCTATGTGGTTGCTCAAGTGGCTACCCGTCCGTTTTGTGGATCGGTTCTTGCTAATCGGCTCGTGGTTGACCATCGGTAGTACT GACCGGTTCGGTCTTGGTCGCCCTAGCCTCGGTCCTTTAGAGCTCAAAAGCCTTCATGGCAAGACTCCTGTTCTTGACGTTGGAACCCTCGCCAAAATTC GAAGTGGTCATATTCAGGTTTTTCCGGGGATCAAGAGAGTAAGAAGACAAACTGTGGAATTCGTGGATGGGAAGATAGAAAAGTTTGATGTGATTCTCTT AGCAACCGGTTACAAGAGCAATGTACCGGTTTGGTTGAAGGAAGGGGAGATGTTCTCAGAAAAAGATGGATTTCCAAGAAGGGGTACTTGGAAAGGAGAG AGTGGGTTATATGCAGCTGGGTTTGCCAAACGTGGATTATTAGGAGCTTCCATTGATGCCCAAAGAATTGCTCAAGATATTGAAAATTCCTGGTTTATTG ATACTGAACAACCCAAAAAGAACATTCCAAATCCCAAGCCATTCACCAAGTCATCAATCTCTTTCTTCCCACAAACGTCTCAATAA
AA sequence Show only first row Show all	>Lus10007671 pacid=23165689 polypeptide=Lus10007671 locus=Lus10007671.g ID=Lus10007671.BGIv1.0 annot-version=v1.0 MNFMMEIAGKQVHDPLYASPPTTMPPRREIVMGPVIVGGGPSGLATAACLKEKGIPSVILERSNCIASLWKHKTYDRLCLHLPKQFCQLPRMDFPENYPE YPSRRQFVDYLNSYVEKFDLRPRFNESVESAEYDKVDGLWKVKTIRRVEEAEEQAGTSTTEYLCRWLVVATGENAEAVVPEIQGIREFVGEVKHSSLYKC GEEYSGKRVLVVGCGNSGMEVSLDLSNFNALPALVVRNTYNKIGGGDDDVDYDHDQVHVLPREMLGKSTFGLSMWLLKWLPVRFVDRFLLIGSWLTIGST DRFGLGRPSLGPLELKSLHGKTPVLDVGTLAKIRSGHIQVFPGIKRVRRQTVEFVDGKIEKFDVILLATGYKSNVPVWLKEGEMFSEKDGFPRRGTWKGE SGLYAAGFAKRGLLGASIDAQRIAQDIENSWFIDTEQPKKNIPNPKPFTKSSISFFPQTSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10007671 [exp]	0	1
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	2.8	0.9194
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028716 [exp]	3.9	0.9210
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10029443 [exp]	4.9	0.9219
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	6.7	0.9129
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10005943 [exp]	6.9	0.9247
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	12.8	0.9016
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10024016 [exp]	14.3	0.8774
AT4G11950			Protein of unknown function (D...		Lus10024479 [exp]	14.4	0.9136
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10002620 [exp]	19.7	0.9171
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	25.2	0.9150

Compare expression of checked genes

Lus10007671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.