Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32700 311 / 2e-93 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT1G50840 54 / 2e-07 PolIA, POLGAMMA2 polymerase I A, polymerase gamma 2 (.1) AT3G20540 53 / 4e-07 PolIB, POLGAMMA1 polymerase I B, polymerase gamma 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022115 [exp] 415 / 2e-129 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10021851 [exp] 91 / 4e-20 ND / Lus10017808 [exp] 82 / 7e-18 ND / Lus10015964 [exp] 74 / 2e-14 ND / Lus10019619 [exp] 55 / 1e-07 AT3G20540 1212 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Lus10040048 [exp] 53 / 4e-07 AT3G20540 999 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Lus10021849 [exp] 47 / 3e-05 AT4G23160 138 / 1e-34 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036600 [exp] 325 / 3e-98 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.001G421300 [exp] 56 / 4e-08 AT3G20540 1110 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Potri.011G136900 [exp] 56 / 4e-08 AT1G50840 1109 / 0.0 polymerase I A, polymerase gamma 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00476 [flax] [poplar] DNA_pol_A DNA polymerase family A
Representative CDS sequence Show only first row Show all	>Lus10007673 pacid=23165686 polypeptide=Lus10007673 locus=Lus10007673.g ID=Lus10007673.BGIv1.0 annot-version=v1.0 ATGGCACACTTATCCACGGATACTTCATTGATTGAACTCCTTAGCGAACCTCAGAGCAACGTTTTTACAACGATAGCTGCTAAATGGACTGGGAAGTCGG AAGATTCTGTTGGCTTCGATGAGAGAGATCATACAAAAAGGTTGGTCTATGGAATTCTCTATGGTATGGGTGCTAACAGTCTAGCTCAGCAACTGGATTG TAGCCCAGATGAAGCTGCAGAGAAGATTAGAAGCTTCAAACACAGCTTTCCAGGGGTTGCGTCCTGGCTCAAGGAAGCAGTTTCTTCTTGCCGTGAAAAG GGGGTACTGACCTTGCTTTTCTTCCTGTATGTGGAAACTCTCAAGGGAAGAAAACGCTTCTTGTCCAAAATAAAATTGGGGAACAGTGAAGAAAAAGCCA AGGCTCAGAGACAAGCAGTTAATTCAATTTGTCAGGGATCAGCTGCTGACATAATAAAGATAGCAATGATTACCCTGCACTCTGCAATTTTTGAAGAAAC CGACGAGACAGATTCTGATTCTTCCCTTGTGAATGAGTTTTATATGCTGAAAGGACGGTGTCGTATTCTTTTGCAAGTACATGATGAATTGGTGTTGGAA GCTGATCCTTCTGTGATTAAAGAAGCTGCTTCACTATTACAAATGAGCATGGAAAATGCTGTGTTGCTTCGTGGTCTGCACATTCTTTTCATTTTCACAT CACAAGGTGCTGGGAAAGATTGGACATATCTAATCAACTTCTGCCGTCAAGCAGACACATTAAGATACCTGATGAAAATGCATCAAGTTGGCCATTTTGG TGACAGTAAATTGGGTTTGGAATTCAACTCTTTGCATGGATGGCCTGCCGAGTTTATTCCATCAGACCTAGACTGCTTTAAGAAGCTAGAGAAATTGAGG AATCTAGCCACAAGACAATTGCGGGAAAGGAAAGCAAGTGTTGATACCAACAAAGTGGCTCTTTCCACTCAACAGGCAGCCTTAAAAGCACAACAAATAG CATTGTTGGCTCAAAACGCAACCTTAAAAGCACAACAAACTGCATTGTTGGCTGAAAAAGTAGCACTTCAGATGGAAATTGGGGAAGTAGAAAACTTGAT ACTGGCGCACGTAGCAAGTACAAGCAATGGGAATGAGAAGCACCAAGCCTTCGAGAAAGGGAGGAAATATGTGGAATATCTTTCTTTTGATGGCGAAGAC GAAGTTGATGCAGCAACAAGGAGAAAAACAAAGCAATGTCATACCGATAGCGATGTTGGCGGAAAGAAAATGCATAAAGCCATTGATGGAGCAGTTATAG TCATTACCAATGACGAAGGAGGAACCAGCAGCACAGGGGAGAACCAGAAAGGGAATTTTTCGGTTTTTAGAAATGAAAATAATAAAAAAGGTGTTGTTGG AGAAGGGGGAATCGAGACAGTAGAAGAAGGTAGAAAGGGGGATGGCCATTTCTTCAATAATGGTGGCTGTGAAAAAATCAGAAACAAGACGAAGTTGGTG TAG
AA sequence Show only first row Show all	>Lus10007673 pacid=23165686 polypeptide=Lus10007673 locus=Lus10007673.g ID=Lus10007673.BGIv1.0 annot-version=v1.0 MAHLSTDTSLIELLSEPQSNVFTTIAAKWTGKSEDSVGFDERDHTKRLVYGILYGMGANSLAQQLDCSPDEAAEKIRSFKHSFPGVASWLKEAVSSCREK GVLTLLFFLYVETLKGRKRFLSKIKLGNSEEKAKAQRQAVNSICQGSAADIIKIAMITLHSAIFEETDETDSDSSLVNEFYMLKGRCRILLQVHDELVLE ADPSVIKEAASLLQMSMENAVLLRGLHILFIFTSQGAGKDWTYLINFCRQADTLRYLMKMHQVGHFGDSKLGLEFNSLHGWPAEFIPSDLDCFKKLEKLR NLATRQLRERKASVDTNKVALSTQQAALKAQQIALLAQNATLKAQQTALLAEKVALQMEIGEVENLILAHVASTSNGNEKHQAFEKGRKYVEYLSFDGED EVDAATRRKTKQCHTDSDVGGKKMHKAIDGAVIVITNDEGGTSSTGENQKGNFSVFRNENNKKGVVGEGGIETVEEGRKGDGHFFNNGGCEKIRNKTKLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	0	1
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	1.4	0.8890
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	3.0	0.8727
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	3.2	0.8889
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	4.0	0.8305
AT5G17460			unknown protein		Lus10009117 [exp]	5.5	0.8478
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	6.6	0.8598
AT5G49530			SIN-like family protein (.1)		Lus10024027 [exp]	6.9	0.8324
AT4G00960			Protein kinase superfamily pro...		Lus10015423 [exp]	7.1	0.8506
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10015716 [exp]	7.9	0.8040
AT3G30841			Cofactor-independent phosphogl...		Lus10003060 [exp]	9.8	0.8032

Compare expression of checked genes

Lus10007673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.