Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25610 308 / 1e-101 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 142 / 4e-39 ATUSPL1 unknown seed protein like 1 (.1) AT1G60390 135 / 2e-34 PG1 polygalacturonase 1 (.1) AT1G70370 133 / 8e-34 PG2 polygalacturonase 2 (.1.2) AT1G23760 127 / 1e-31 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022114 [exp] 500 / 1e-176 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10003263 [exp] 383 / 4e-132 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10026333 [exp] 182 / 4e-55 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10006555 [exp] 169 / 7e-52 AT5G25610 122 / 8e-35 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007011 [exp] 172 / 3e-50 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10032324 [exp] 168 / 4e-49 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10006665 [exp] 167 / 7e-48 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10006667 [exp] 164 / 3e-47 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1) Lus10042335 [exp] 151 / 1e-42 AT1G49320 184 / 6e-57 unknown seed protein like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243700 [exp] 389 / 6e-134 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 390 / 7e-134 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 386 / 4e-132 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 230 / 5e-72 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 229 / 5e-72 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 229 / 5e-72 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 224 / 6e-70 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.009G114600 [exp] 174 / 4e-51 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1) Potri.004G153100 [exp] 166 / 6e-48 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114300 [exp] 162 / 3e-46 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [flax] [poplar] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Lus10007674 pacid=23165675 polypeptide=Lus10007674 locus=Lus10007674.g ID=Lus10007674.BGIv1.0 annot-version=v1.0 ATGAAGAAGTTCAATAATCCTCTCTATGTTCTTGGATTTCTCACTATTGCCCTTGCTGCTACCCATGCTGCCATTACTCCTCAACTGTACTGGAAATTAG TCCTCCCAAACACCTCCATGCCAAAAGCTGTCAGTGATCTTTTGCAGCCAGACTTGTTGGAAGACAAGAGCACAGCCGTTACTGTTGGAAGTGGTGGTGT GAATGTCGATGCAGGCAAAGGAAAGCCCTCTGGTACAGCAGTCAATGTCGGAAAGGGTGGAGTTAACGTGAACACTGGCAAGGGAAAGCCCGGTGGTGGG ACACATGTCAACGTTGGGGGCAAAGGTGGTGTTGATGTCAATACTAGGAAGCCTGGGGGTAGAACTAACGTTGGTGTCGGCAAAGGCGGCGTTGATGTCA CAACTGGAAAGCCTGGTGGCGGTAGAACTAAAGTTGGTGTCGGCAAAGGCGGCGTCGGTGTCTCAGCTGGAAAGCCTGGTGGTAGAACAAATGTTGGTGT CGGCAAAGGTGGAGTATCTGTACACACAGGGCACAAGGGGAAGCCTGTATACGTTGGAGTTAGCCCAGGGAAGAACCCCTTCCTTTACAACTATGCTGCC ACTCAAGATCAACTGCATGATCATACTACTGCAGCAATCTTTTTCTTGGAGAAAGATATGCACCCTGGCAAAGTTATGAACTTGGATTTCACTGAGACCC CACAAAGGGCAACCTTCTTACCTCGAAAAGTCGCTGACTCCATCCCATTCTCATCCGAAAAGCTACCCGAGATCTTCAACGAGTTTGAGGTAAACCCCAA ATCTCAGGAGGGCGAGACGATGAAGAACACTATCAAGGAATGTGAAAGCCCTGTGATCCGAGGAGAGGAGAAACATTGTGCCACTTCACTAGAGTCGATG ATTGATTTCAGCACTTCCAGACTTGGAACGAACGTCCGCGCAATCTCTACAGAAGTAAAGAAACAAACTGGGCACCAGGAATATAAAATCAAAGATGGAG TAACAAAGATGACGGCTTCCAGATCAGTGGTATGCCATAATCAGAAGTATGTATACGCTGTCTTTTACTGCCACGCAACACAAACCTCAAAGGCGTACAT GGTTCCACTGGAAGGTGCCGATGGAACAAAGGCTAATGCAGTAGCAGTTTGTCATACCGATACATCACAATGGAACCCCAAGCATTTGGCTTTTCAGGTG CTCAAGATTAAACCAGGAACTGTTCCGATCTGCCATTTCCTTCCTCAGGATCACATTGTCTGGGTGCCTAACAACTAG
AA sequence Show only first row Show all	>Lus10007674 pacid=23165675 polypeptide=Lus10007674 locus=Lus10007674.g ID=Lus10007674.BGIv1.0 annot-version=v1.0 MKKFNNPLYVLGFLTIALAATHAAITPQLYWKLVLPNTSMPKAVSDLLQPDLLEDKSTAVTVGSGGVNVDAGKGKPSGTAVNVGKGGVNVNTGKGKPGGG THVNVGGKGGVDVNTRKPGGRTNVGVGKGGVDVTTGKPGGGRTKVGVGKGGVGVSAGKPGGRTNVGVGKGGVSVHTGHKGKPVYVGVSPGKNPFLYNYAA TQDQLHDHTTAAIFFLEKDMHPGKVMNLDFTETPQRATFLPRKVADSIPFSSEKLPEIFNEFEVNPKSQEGETMKNTIKECESPVIRGEEKHCATSLESM IDFSTSRLGTNVRAISTEVKKQTGHQEYKIKDGVTKMTASRSVVCHNQKYVYAVFYCHATQTSKAYMVPLEGADGTKANAVAVCHTDTSQWNPKHLAFQV LKIKPGTVPICHFLPQDHIVWVPNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	1.4	0.9855
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10015279 [exp]	2.6	0.9536
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10031520 [exp]	2.8	0.9564
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	3.2	0.9682
AT5G45650			subtilase family protein (.1)		Lus10002780 [exp]	4.9	0.9540
					Lus10020641 [exp]	5.5	0.9568
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	5.9	0.9563
					Lus10017869 [exp]	6.5	0.9462
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	7.1	0.9492
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	8.5	0.9528

Compare expression of checked genes

Lus10007674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.