Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32700 82 / 3e-16 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022115 [exp] 722 / 0 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036600 [exp] 201 / 2e-56 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007675 pacid=23165679 polypeptide=Lus10007675 locus=Lus10007675.g ID=Lus10007675.BGIv1.0 annot-version=v1.0 ATGGCTCTGATTACTGCTGCAAAGGATGAGATTGCCGACTTTCTGGAAGCCTTTCAAGATGATCGTGCCATGCTTGGAGGAGGGTTTTATGCTTCAAAAA AGAGAAAACTCTCTTCGCCTGCACCGAAGGTGGGTAGGGCTGAGAAAGGTGCTAGACTTTCTGCAGAAGGATCCCCGATTTCAAAAGGAACTTTACCCAT TTATTTGGTGGGTTCAAAAGAGCAAGATCATGTCATCAAGGCTGTTTCTGAAGATCGAGGTCCGAAGGGTGGAGAATATTCTACTCAAAGCCAACTCTTG TCGGAGGTCAATAGGTTTTCCAAACAAGACAACAAGGACTTATTTTCTTCTGTTCGGCCGTCAAAAGGAGATACTACAAGGAAGGAAACTTCTCAGGGTT CTTCTAATGTTGGAAATGTTGCAATTGAAAGTGCTTTCAAAGGTTGCCTGGTTTCAGGTGCCCATGCAGAAAATTTGGAACTTAAACATGAACTTCAGTC AACTGCAACCTCGCCGTCCAAAATAAATTTGACTGATAATAAGATACATTCCAACCATTTGCCAGAGGATGGTAAGGATAGAGTGCTGAAGAAGCGGTTA TACATACCTAATCAGCTGCATTCAGGGCCTCTTGTTGCTTGCTCTCCTATGGACAAGACAGAAGATATGCAGTCAATTATTACTCCAGAAAATAAAACAT GCATTGTTGGTGCTTCAGAACAGCATCAGTCAGGCCTGAATAAATGTGACAAAAAGTCGAAGTTGACTGTGAATTTGACTGACTGCTGTACACCAGGGCC ACCTAGTGTGAAAGCATATCTGCATGAAACCCCTAAGTCAGTACGTGGCAGTTCAATGTTCTCCCCAGGGGAAGCTTTCTGGTGTGAAGCAATTCAAGTT GCTGATGGTATATTTGCTGATACTGAAAATGCTCTTACCATAGTCAGTATGAATGATGGACACAATGGAGACAATCAAATGGAAGTCTTGTATGAAGCTG AGAGTAGAAGTCAGGTTATGGACAATGGCAGCTACAAGGAGTCAGTTATGAAGAATCACAACAAAAGTTCTGCTGATGAAGTGTCTCCACTGCCTGTGAA ACATCTTAACTTTTTGTTGGATGAAAAAGCATCAAACTCAAATATCCAATGTGGTGCAGCTAAAAGTTTAAAAACGAGCAGAGATGGTAAACAATCAGTA TCTCAAATGGCTGGTCTGAAACACTGTAAAAAAACTGATGTTCTAAGATCTATCTCTAAGGCTTGA
AA sequence Show only first row Show all	>Lus10007675 pacid=23165679 polypeptide=Lus10007675 locus=Lus10007675.g ID=Lus10007675.BGIv1.0 annot-version=v1.0 MALITAAKDEIADFLEAFQDDRAMLGGGFYASKKRKLSSPAPKVGRAEKGARLSAEGSPISKGTLPIYLVGSKEQDHVIKAVSEDRGPKGGEYSTQSQLL SEVNRFSKQDNKDLFSSVRPSKGDTTRKETSQGSSNVGNVAIESAFKGCLVSGAHAENLELKHELQSTATSPSKINLTDNKIHSNHLPEDGKDRVLKKRL YIPNQLHSGPLVACSPMDKTEDMQSIITPENKTCIVGASEQHQSGLNKCDKKSKLTVNLTDCCTPGPPSVKAYLHETPKSVRGSSMFSPGEAFWCEAIQV ADGIFADTENALTIVSMNDGHNGDNQMEVLYEAESRSQVMDNGSYKESVMKNHNKSSADEVSPLPVKHLNFLLDEKASNSNIQCGAAKSLKTSRDGKQSV SQMAGLKHCKKTDVLRSISKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007675 [exp]	0	1
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10033282 [exp]	1.7	0.7688
AT3G09250			Nuclear transport factor 2 (NT...		Lus10022605 [exp]	9.8	0.7822
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	13.3	0.7805
AT5G35170			adenylate kinase family protei...		Lus10019071 [exp]	19.8	0.7495
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10036860 [exp]	27.9	0.7498
AT1G53120			RNA-binding S4 domain-containi...		Lus10041931 [exp]	28.3	0.7516
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	29.0	0.7592
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	30.7	0.7548
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	31.5	0.7026
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10002108 [exp]	31.6	0.7499

Compare expression of checked genes

Lus10007675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.