Plant FIBer expression Database

Lus10007676 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25590 73 / 1e-16 Protein of unknown function (DUF630 and DUF632) (.1)
AT1G52320 65 / 8e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022116
[exp]
123 / 3e-34 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Lus10037901
[exp]
100 / 1e-26 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Lus10025777
[exp]
79 / 8e-19 AT1G52320 652 / 0.0 unknown protein
Lus10035887
[exp]
78 / 3e-18 AT1G52320 747 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G036400
[exp]
94 / 4e-24 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Potri.006G244100
[exp]
81 / 3e-19 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Potri.003G054800
[exp]
69 / 4e-15 AT1G52320 626 / 0.0 unknown protein
Potri.001G181100
[exp]
64 / 2e-13 AT1G52320 615 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10007676 pacid=23165683 polypeptide=Lus10007676 locus=Lus10007676.g ID=Lus10007676.BGIv1.0 annot-version=v1.0
ATGCGGAGAGCCCCGTCTGAGGAGAGGGATGCTGCTGATAGAGTTGAAGATGCAAACCTAAAGGATCTTGTTGCAGAGAGGCAATTTGAAGTAGAGAGCC
TGCAGAAAAGACTAGAAGAGGAGGTTGAAGCTCATCAGAGGCATTGCCTACAAGTTAGGGAGAAGTCACTTGGAAGCCTTAAGACTCGTCTACCGGAGTT
GTTCGGGCTATGTCTGACTATTCACATGGCTGTTATGATACGTATGAGAAGATGA
AA sequence
>Lus10007676 pacid=23165683 polypeptide=Lus10007676 locus=Lus10007676.g ID=Lus10007676.BGIv1.0 annot-version=v1.0
MRRAPSEERDAADRVEDANLKDLVAERQFEVESLQKRLEEEVEAHQRHCLQVREKSLGSLKTRLPELFGLCLTIHMAVMIRMRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G25590 Protein of unknown function (D... Lus10007676
[exp]
0 1
AT2G31580 tRNAHis guanylyltransferase (.... Lus10006155
[exp]
14.1 0.8578
AT1G67260 TCP TCP1 TCP family transcription facto... Lus10034072
[exp]
15.3 0.8560
AT5G60970 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea... Lus10017856
[exp]
16.9 0.8552
AT3G14760 unknown protein Lus10042496
[exp]
20.3 0.7839
AT5G59800 ATMBD7, MBD7 ARABIDOPSIS THALIANA METHYL-CP... Lus10040859
[exp]
21.2 0.8429
AT1G15260 unknown protein Lus10011448
[exp]
23.0 0.8521
AT5G16120 alpha/beta-Hydrolases superfam... Lus10017600
[exp]
23.9 0.8446
AT3G02110 SCPL25 serine carboxypeptidase-like 2... Lus10015382
[exp]
24.3 0.8409
AT5G11630 unknown protein Lus10002035
[exp]
29.0 0.7288
Lus10014719
[exp]
36.6 0.8427

Lus10007676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.