Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034056 [exp] 112 / 2e-27 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10003025 [exp] 104 / 7e-25 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10036312 [exp] 103 / 2e-24 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10017803 [exp] 98 / 5e-23 ND / Lus10027612 [exp] 94 / 2e-21 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029758 [exp] 91 / 5e-20 ND / Lus10025008 [exp] 90 / 7e-20 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10014851 [exp] 83 / 1e-17 ND 34 / 0.005 Lus10030315 [exp] 82 / 6e-17 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007681 pacid=23165693 polypeptide=Lus10007681 locus=Lus10007681.g ID=Lus10007681.BGIv1.0 annot-version=v1.0 ATGCTCATTTGCGAAATCTCCGCAGATAGCTCACCGGCCGAGCTTCACCTACAGCTGAAGCATACATGGAAATTATGCCACCCGTCCTGGCCTGATCGGT TTTTTGCGTTCGGGACTATATGGACGGACGCCGAGGAAGCCCGATACCGTTGTACGGCTACTATTACAGGGATTGACCGCCATCAACATTGGTGTTATAT TGCCCGCCCACATTGTTTTTCTGCGATAGTAGCAAACGGTCCAGACTTCTGGTGCCAGAATCATGCCTCTATCCTAGCTGGCGATGTCACATATAGTGAG TTAGCGTTGGCGTATCCATCTGACTATGGTGAACTTCCTCCCCCGTTGAAAATTCTGGAAGGCAAGCATGTGACCTTTGAGGTGCATCTTCCGCGCCACA TGCATTCAAATGCGTATGATGATTGCATTGTCACGAAAATTTGGGGCCTTGTGGCACCACGCGCACATCTTCTCGCACAACTGCCAAACCCCGTTCCTAC CCTCGCCAATGCAAGATCACCAAGTACATTGGTGCAGCCCCCTATGGACCAATTAACTGTACTTACCCCTGCCAATGTTTGTATTCCTATGATTCCACAG ATGCACACTCCAATTTCTGATGTCCTTCCACATTGTTCTGTCATGCAACCTTTTATAGGCACATTCAATGGTGCTGGGAAACTGGACAAACCCTTGCTTC TTAAACCTTATGTTTTGTCTGCTGAATCTGCTTCTCCTCTTGCCAAGGTGAAGCAAGAGCGTCTTGAAACCATCATTACCCTGATACCAGCAAAGCAAAA GAAGGCTTATGCCGCCAAACCAGGACCTGCAGTGGCCATGCCCAAACCCGCTGACGAACCACCAAAGCGAACTCCAAAACGCCTTTTCCAGGACTAA
AA sequence Show only first row Show all	>Lus10007681 pacid=23165693 polypeptide=Lus10007681 locus=Lus10007681.g ID=Lus10007681.BGIv1.0 annot-version=v1.0 MLICEISADSSPAELHLQLKHTWKLCHPSWPDRFFAFGTIWTDAEEARYRCTATITGIDRHQHWCYIARPHCFSAIVANGPDFWCQNHASILAGDVTYSE LALAYPSDYGELPPPLKILEGKHVTFEVHLPRHMHSNAYDDCIVTKIWGLVAPRAHLLAQLPNPVPTLANARSPSTLVQPPMDQLTVLTPANVCIPMIPQ MHTPISDVLPHCSVMQPFIGTFNGAGKLDKPLLLKPYVLSAESASPLAKVKQERLETIITLIPAKQKKAYAAKPGPAVAMPKPADEPPKRTPKRLFQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007681 [exp]	0	1
AT2G33580			Protein kinase superfamily pro...		Lus10022489 [exp]	3.5	0.7358
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	4.8	0.7678
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	6.0	0.7574
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10039975 [exp]	8.8	0.7070
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10005325 [exp]	9.2	0.7420
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	12.2	0.7600
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	12.6	0.7101
AT2G40070			unknown protein		Lus10002493 [exp]	17.0	0.6702
AT5G38760			Late embryogenesis abundant pr...		Lus10034100 [exp]	19.1	0.7028
					Lus10034724 [exp]	23.7	0.7297

Compare expression of checked genes

Lus10007681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.