Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15130 288 / 9e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37170 182 / 2e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 180 / 4e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 181 / 5e-53 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 181 / 8e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 179 / 2e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G08820 177 / 1e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 178 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 177 / 3e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40410 174 / 4e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030124 [exp] 195 / 1e-59 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022125 [exp] 196 / 8e-58 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10005638 [exp] 175 / 7e-55 AT5G40410 305 / 9e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 176 / 2e-52 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020588 [exp] 170 / 2e-52 AT2G27610 422 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006073 [exp] 178 / 3e-52 AT1G71420 471 / 1e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 177 / 6e-52 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 176 / 1e-51 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029401 [exp] 175 / 2e-51 AT1G34160 674 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G244500 [exp] 339 / 2e-113 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 195 / 1e-57 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 191 / 4e-57 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G252400 [exp] 186 / 2e-56 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G058900 [exp] 191 / 5e-56 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G035900 [exp] 187 / 1e-55 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G014800 [exp] 184 / 1e-54 AT5G40410 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G354400 [exp] 183 / 4e-54 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 182 / 5e-54 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 183 / 1e-53 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007682 pacid=23165682 polypeptide=Lus10007682 locus=Lus10007682.g ID=Lus10007682.BGIv1.0 annot-version=v1.0 ATGCCCGTGGAACCAAATGCAGGCATATGGCAAACATTGCTTAGCGCGTGTCGAGTACATGGAGATATTTACATGGGAAGAGAAGTTGGTAACATCATTC TCAGAATGGATGGAAATAACCCAATAAACTATGTGATGCTGTCAAATATGTACGCCAATGCTGGCTACTGGGAAGAATCCCAGACGCTAAGAGAAACAGT GACATCAAAGAAACTGAAGAATGAAGCAGGGAGGAGCTGGGTTGAGATTGACAAGGAAATCCATTTATTCTATGGTGGAGATGACAGACATCCTCTAGCA GAGCAAATACGGCAAGTACTGGAGGAGAAGGGGAGAAGAATGAAACAAGAGCTAGGGTATGGGAACGAAGTAAAGCATGCATCACACGACATTGATGAAG AATCGATGAAAGAGAGCCTAAGATTTCATAGTGAGAAGTTGGCGATTGGGATGGCGTTGGTTTGCGGAGGGTGGGAGAAGACAAGGGTAATCCGGGTGTT CAAGAACTTGAGAGTTTGTGCAGACTGTCATGAATTCATCAGAGGACTGTCAAGGATATTACAAGTGGTGTTCGTGGTAAGAGATGCTAACAGATTTCAC AGGTTTGAAAATGGACTCTGTTCTTGCAGGGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10007682 pacid=23165682 polypeptide=Lus10007682 locus=Lus10007682.g ID=Lus10007682.BGIv1.0 annot-version=v1.0 MPVEPNAGIWQTLLSACRVHGDIYMGREVGNIILRMDGNNPINYVMLSNMYANAGYWEESQTLRETVTSKKLKNEAGRSWVEIDKEIHLFYGGDDRHPLA EQIRQVLEEKGRRMKQELGYGNEVKHASHDIDEESMKESLRFHSEKLAIGMALVCGGWEKTRVIRVFKNLRVCADCHEFIRGLSRILQVVFVVRDANRFH RFENGLCSCRDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10007682 [exp]	0	1
AT3G07220	FHA		SMAD/FHA domain-containing pro...		Lus10038197 [exp]	16.0	0.5482
AT3G55780			Glycosyl hydrolase superfamily...		Lus10040232 [exp]	17.7	0.5972
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	19.1	0.6742
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10003681 [exp]	19.7	0.7028
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	23.5	0.7048
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10024274 [exp]	24.5	0.6549
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10028499 [exp]	25.0	0.6327
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10021649 [exp]	28.8	0.6783
AT1G29270			unknown protein		Lus10007304 [exp]	32.4	0.6935
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10018022 [exp]	35.9	0.6595

Compare expression of checked genes

Lus10007682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.