Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15130 323 / 6e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 214 / 5e-64 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G15720 197 / 1e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 197 / 7e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 197 / 3e-57 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14050 194 / 3e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 197 / 4e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G20730 191 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 195 / 2e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 193 / 3e-56 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030124 [exp] 536 / 0 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 210 / 1e-62 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 208 / 2e-62 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 202 / 3e-59 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027534 [exp] 195 / 3e-58 AT3G20730 474 / 2e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002054 [exp] 199 / 9e-58 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036029 [exp] 192 / 2e-57 AT5G27110 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 193 / 5e-57 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024220 [exp] 195 / 1e-56 AT1G74600 924 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G244500 [exp] 387 / 6e-131 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 218 / 1e-65 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G006700 [exp] 205 / 1e-61 AT1G56570 732 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 206 / 3e-61 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G006800 [exp] 205 / 5e-61 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068900 [exp] 202 / 7e-61 AT3G20730 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 203 / 8e-60 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G010900 [exp] 194 / 9e-58 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 197 / 2e-57 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 193 / 2e-56 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007683 pacid=23165681 polypeptide=Lus10007683 locus=Lus10007683.g ID=Lus10007683.BGIv1.0 annot-version=v1.0 ATGATAGCAGCGTACAATCTTACAGGGAAGGGTAAGAAAGCTCTGGGTGTGTTCAGGAAAATGAGAGAAGATGGACAAGTTCCAGATGAGTTTACACTTA CAAGTGCCTTGAAGGCCTGTACCAAGCTCGGTGCTGCTAGAGAAGCAGCGCAGATTCATGCATCATCGGTCCCTGGTGGCTTTCATTATTCCGACAAGGC TATTGTTGCTGGTTACTTGATAGATTCGTATGTGAAATGTGGGGAGCTGTTGCAAGCTCGACGAGTATTTGATCAGATTGAGAAGAAACATATAATATCG TGGAGTGCACTGATTCTCGGCTATGCTCAAGAAGAAAAGTTAGAAGAAGCCATGGAGCTGTTTAAGCTGCTAAGACTTGGTACAATTGAAGTTGACGAAT ATGTGCTGTCCAGTATGATGGCCATCTTTGCAGATTTTGCCCTGGTGGAGCAAGGCAGGCAAGTTCATGGTTTTAGCCTTAAGATCCCCTCTGGTTTGTG GATTTCGATATGTAATTCAGCTCTAGATATGTATCTCAAATGTGGGATGATTGAAGATGCTAAGAAACTGTTTGGTGCAATGTCAGCGAGAGACGTGGTT TCCTGGACTGTAATGATCACTGGCTACGGAAAGCATGGTCTTGGGAAAGAGGCAGTTTATCTCTTCAACAGAATGCTATCGCAAAATATTAAGCCTGATG ATGTTATCTACTTGGCCTTTCTCTTAGCCTGCAGCCATTCAGGGTTGGTGGAAGAAGGTGAAGAGTACTTATCCAAGTTATGCAGCGATGAGGGGATCAA ACTTAGAGTTGAGCATTATGCCTGCATGGTTGATCTCGTGGGCCGTGTCCGAAGATTAAACTAA
AA sequence Show only first row Show all	>Lus10007683 pacid=23165681 polypeptide=Lus10007683 locus=Lus10007683.g ID=Lus10007683.BGIv1.0 annot-version=v1.0 MIAAYNLTGKGKKALGVFRKMREDGQVPDEFTLTSALKACTKLGAAREAAQIHASSVPGGFHYSDKAIVAGYLIDSYVKCGELLQARRVFDQIEKKHIIS WSALILGYAQEEKLEEAMELFKLLRLGTIEVDEYVLSSMMAIFADFALVEQGRQVHGFSLKIPSGLWISICNSALDMYLKCGMIEDAKKLFGAMSARDVV SWTVMITGYGKHGLGKEAVYLFNRMLSQNIKPDDVIYLAFLLACSHSGLVEEGEEYLSKLCSDEGIKLRVEHYACMVDLVGRVRRLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10007683 [exp]	0	1
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	5.0	0.7939
					Lus10003766 [exp]	9.5	0.6914
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022133 [exp]	12.5	0.7506
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	15.6	0.7680
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10039814 [exp]	19.5	0.7339
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	26.6	0.7661
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	30.5	0.7392
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	33.6	0.7593
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10028074 [exp]	34.6	0.7554
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	43.6	0.7131

Compare expression of checked genes

Lus10007683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.