Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32680 70 / 1e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030127 [exp] 206 / 2e-66 ND 37 / 0.006 Lus10030126 [exp] 98 / 5e-26 ND 38 / 6e-05 Lus10025776 [exp] 47 / 9e-06 AT1G52343 112 / 1e-29 unknown protein Lus10035889 [exp] 40 / 0.0008 AT4G32680 40 / 3e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035800 [exp] 125 / 4e-34 AT4G32680 76 / 1e-15 unknown protein Potri.006G244600 [exp] 80 / 6e-18 AT4G32680 43 / 4e-05 unknown protein Potri.003G055200 [exp] 72 / 3e-14 AT1G52343 96 / 2e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007686 pacid=23165691 polypeptide=Lus10007686 locus=Lus10007686.g ID=Lus10007686.BGIv1.0 annot-version=v1.0 ATGGCATCTAATTCCAACGCAGCCATTGCCAGAGAATCAAGGAGGCGAAAAATCTTAGAACGAGGCGCCGACCGATTAGCTATCATCACCGGCGGGATCC ACTCTCTTCCTGCTCAATCCTCCGGCGGCGATGGAAAGCCCTCTGCCGGCTCGTCGAATTTCCGTCCCCACTTTAACGAGATTCCTACTGTCACTGCTGT TGAAGCAGCACCTAAGCCGTCGAATTCTCTTCCGAAGCAAGTTGAAGAACCGATGCTGCCGCTCCACGAACCAACTGGTTCGGTTGATGTTCTGAATGGA AGTTCTGGTCCTACCCTGCCGGACGAAGCAGCAGGAGCTGCCACTGGTACCTCCACCGGTCATTTTGTTAGCAATTTGGATGAAATTAGAGAAACGGTGC AGCAATCGGGATCTGTCCGATCGATTCACAGTCCGGAAGCCATTGAATCAAGTTCGGGCACAGAGCAACTTGTTCGAGGACAGACTCGTCAAAGGAGATT CGTGACTCCTGGTCAAATAAGTTCCGCCATTACAGCATCAGAAAGGACCAGGGTTATCTGTTCTGTGGCTATTGCCATTTTAGTGGCCTCATCATATCTA GGGTTCCCTCTTCTAGGGAACAGTATAGTGAAGGGAATTCTGGGCTTCAGGCCTCTTTATCTGCTGCTGCTGACCAATGCAACGGTTGTTCTCGCCCGTG TCCTTTTGAACAACCAGTGGAGTTCAGAAATGGTTGAAATGCAATCACAGAGTGGCAGTTATGACTGGGCTGCACAAGCAAGTAAGGCGCTTGAGATAAG TTTAATGGCCAAGAAAGCAGTTGATGCGATACTGATGGATGCTAGTGTTTATGCGATCATTGTTGTTTGTGCTTTCTGCCTTCTGGGGCTTTGA
AA sequence Show only first row Show all	>Lus10007686 pacid=23165691 polypeptide=Lus10007686 locus=Lus10007686.g ID=Lus10007686.BGIv1.0 annot-version=v1.0 MASNSNAAIARESRRRKILERGADRLAIITGGIHSLPAQSSGGDGKPSAGSSNFRPHFNEIPTVTAVEAAPKPSNSLPKQVEEPMLPLHEPTGSVDVLNG SSGPTLPDEAAGAATGTSTGHFVSNLDEIRETVQQSGSVRSIHSPEAIESSSGTEQLVRGQTRQRRFVTPGQISSAITASERTRVICSVAIAILVASSYL GFPLLGNSIVKGILGFRPLYLLLLTNATVVLARVLLNNQWSSEMVEMQSQSGSYDWAAQASKALEISLMAKKAVDAILMDASVYAIIVVCAFCLLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52343			unknown protein		Lus10007686 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	3.7	0.7149
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017626 [exp]	4.7	0.6999
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10002832 [exp]	6.6	0.6651
AT4G18230			unknown protein		Lus10024587 [exp]	10.8	0.6379
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10021798 [exp]	12.8	0.6686
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009856 [exp]	15.7	0.6436
AT5G26200			Mitochondrial substrate carrie...		Lus10026466 [exp]	23.4	0.6101
AT5G53280		PDV1	plastid division1 (.1)		Lus10027574 [exp]	25.4	0.6126
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	29.7	0.6647
AT5G17190			unknown protein		Lus10034347 [exp]	32.5	0.6277

Compare expression of checked genes

Lus10007686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.