Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08170 457 / 6e-162 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 361 / 1e-123 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT5G16760 224 / 4e-71 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT2G43980 72 / 2e-13 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032808 [exp] 649 / 0 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10035662 [exp] 419 / 7e-147 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 319 / 2e-108 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 315 / 3e-107 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10039098 [exp] 229 / 2e-70 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038765 [exp] 221 / 6e-70 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035811 [exp] 202 / 2e-62 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10012447 [exp] 72 / 1e-15 AT4G08170 80 / 7e-20 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10033768 [exp] 65 / 2e-11 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G149800 [exp] 525 / 0 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.009G084600 [exp] 409 / 3e-143 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.001G140000 [exp] 252 / 3e-81 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 250 / 1e-80 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.019G047200 [exp] 211 / 9e-66 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.017G007500 [exp] 69 / 2e-12 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10007689 pacid=23164948 polypeptide=Lus10007689 locus=Lus10007689.g ID=Lus10007689.BGIv1.0 annot-version=v1.0 ATGGGCCTGCAAGAAGAGATTGTGCCGCTCCAGAACGGAGGAGTCGGAGGAGCCTACGATGATAACCAAGTTGAAGAGCCGGTCATGGATGTCTCGCCTC TAGGGATTGGAATTCCTCCTCAGAGGAAATTCGTCGTTGTCGGTTACGCTCTTACTTCCAAGAAGATTAAGAGCTTTTTGCAGCCTAAACTTGAACGATT AGCTAGGAACAAAGGAATCTTGTTTGTTGCAATTGATCAGAGCAAGCCACTTTCGGATCAAGGTCCTTTTGACATTGTGCTTCATAAGCTTACCGGGAGG GAGTGGAGACAGATTCTCGAGGATTACAGAAGAAGTCATCCAGAAGTTACAGTTCTTGATCCGCCAGATGCAATACAACATTTGCACAACCGCCAGTCCA TGCTTCAGTGTGTTGCAGACATGAACTTATGCAGCTCATATGGAAAAGTTGACGTTCCAAGGCAGTTGGTTATTAAGAAGGATGCTTCATCCATTCCTGA TGCAGTTGCAAAAGCTGGGCTGATGCTCCCTATTGTTGCAAAACCATTGGTTGCTGATGGGAGTGCAAAGTCGCATGAATTATCCCTGGCGTATGATCAA TACTCGCTTCGAAATCAATACTCGCTTCGAAAGCTTGAACCTCCACTTGTTCTTCAAGAGTTCATTAACCATGGTGGTGTTCTTTTCAAAGTTTACATTG TTGGGGAAGCCATAAAGGTGGTAAGAAGGTTTTCCTTACCTGATGTCTGTGAAAGAGAACTTGCCAACAGTGCTGGTGTTTGCCGCTTCCCTCGTGTTTC ATGTGCTGCAGCTTCTGCAGATGAAGCAGATCTGGACCCTGTTATTGCTGAACTTCCACCCCGCCTCTTGCTGGAGAAACTTGGGAAAGAACTACGTCGC CGCCTGGGTCTTAGGCTGTTCAATCTGGATATTATACGGGAGCATGGCACTAGAGATCAGTTTTATGTCATCGACATTAACTACTTCCCAGGGTATGGGA AAGTGCCGGAATACGAACATATATTTACAGATTTCCTATTAGGCCTTGCTGAGAGTAAATACAAGAAGAAATCGTACCCGTGA
AA sequence Show only first row Show all	>Lus10007689 pacid=23164948 polypeptide=Lus10007689 locus=Lus10007689.g ID=Lus10007689.BGIv1.0 annot-version=v1.0 MGLQEEIVPLQNGGVGGAYDDNQVEEPVMDVSPLGIGIPPQRKFVVVGYALTSKKIKSFLQPKLERLARNKGILFVAIDQSKPLSDQGPFDIVLHKLTGR EWRQILEDYRRSHPEVTVLDPPDAIQHLHNRQSMLQCVADMNLCSSYGKVDVPRQLVIKKDASSIPDAVAKAGLMLPIVAKPLVADGSAKSHELSLAYDQ YSLRNQYSLRKLEPPLVLQEFINHGGVLFKVYIVGEAIKVVRRFSLPDVCERELANSAGVCRFPRVSCAAASADEADLDPVIAELPPRLLLEKLGKELRR RLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKVPEYEHIFTDFLLGLAESKYKKKSYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10007689 [exp]	0	1
AT1G02010		SEC1A	secretory 1A (.1.2)		Lus10015870 [exp]	2.6	0.7009
AT4G24290			MAC/Perforin domain-containing...		Lus10037363 [exp]	9.6	0.6704
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10001984 [exp]	9.9	0.6791
					Lus10033246 [exp]	21.7	0.6030
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10004156 [exp]	21.8	0.6057
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	25.9	0.6562
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10032808 [exp]	29.0	0.6694
AT5G10960			Polynucleotidyl transferase, r...		Lus10029713 [exp]	33.9	0.5518
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10041217 [exp]	39.2	0.5279
					Lus10034724 [exp]	64.8	0.5900

Compare expression of checked genes

Lus10007689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.