Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09960 363 / 3e-123 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT1G22710 232 / 3e-72 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT2G14670 225 / 1e-69 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 221 / 3e-68 ATSUC6 sucrose-proton symporter 6 (.1) AT1G66570 221 / 3e-68 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT5G06170 217 / 8e-67 ATSUC9 sucrose-proton symporter 9 (.1) AT1G71880 214 / 2e-65 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G71890 207 / 1e-62 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT2G02860 200 / 2e-60 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032815 [exp] 514 / 0 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10018915 [exp] 225 / 2e-69 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 223 / 1e-68 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10017910 [exp] 216 / 4e-66 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10009428 [exp] 208 / 2e-64 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10007702 [exp] 206 / 2e-62 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10030492 [exp] 207 / 2e-61 AT2G02860 863 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Lus10029766 [exp] 198 / 6e-59 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028614 [exp] 197 / 1e-58 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106900 [exp] 402 / 9e-139 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.019G085800 [exp] 219 / 6e-67 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.013G115200 [exp] 210 / 1e-63 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.010G093600 [exp] 207 / 5e-62 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 205 / 4e-61 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007691 pacid=23164947 polypeptide=Lus10007691 locus=Lus10007691.g ID=Lus10007691.BGIv1.0 annot-version=v1.0 ATGGCTGTTGGCAATATCCTTGGCTTTGCTACTGGAGCTTTCAGTGGTTGGTACAAAATTTTTCGGTTCACTCTTACTACTGCATGTGACGTGGACTGTG CCAACCTTAAAGCTGCTTTCTATCTTGATGTTGTCTGTATTGTAATCACCGCATATATCAGTATTTCATCAGCTAAAGAACCATCTATAAGCTTGCTTCA TGCATCTACTCCTGTTGTTGAAGAAGAAGCAGTTGAGTCCAGCCCTGTAGAAGAGGCTTTCCTCTGGGAGCTGTTTGGTACTTTCGGATATTTCCCAGCA TCTGTGTGGACTATATTGCTTGTTACTGCTCTCAATTGGATCGGTTGGTTTCCGTTTCTACTCTTTGATACCGACTGGATGGGGCGAGAAATCTATGGCG GGGACCCAGATGGAGGACCAAGTTATAGTTCTGGAGTGAGAATGGGAGCGTTTGCACTTATGTTAAATTCCGTGCTTTTAGGAATAACGTCAGTACTGAT GGAGAAGATCTGCAGGAAGTGGGGAGCTGGCTTCATTTGGGGACTCTCTAACATCTTCATGGCTATCTGCTTCCTTTCAATGCTTATAATTGCCTATGTA GCATACCATATGGGCTATCTGGGTCATGGTGAACCACCAGTTGGTATTCTTGTTGCTGCGCTGACTGTTTTTGCATTCCTTGGGATTCCATTGGCAATCA CCTATAGTGTTCCATATGCCTTAGTGTCCTCACGAATTGAGCCTTTGGGGCTTGGCCAAGGGTTATCGATGGGTGTATTGAATTTGGCAATTGTCGTCCC GCAGGTGCTGGTGTCGGTGGGATCTGGTCCGTGGGATCAGTTGTTCGGAGGTGGAAACTCGCCAGCCATAGCTGTGGGAGGTTTGGCAGCACTAATAGGT GGAGTGATCGCTATATTGGGGATTCCTCGTTTCACTGCTCAAAAGCCAAGGCTTCTTCCATGA
AA sequence Show only first row Show all	>Lus10007691 pacid=23164947 polypeptide=Lus10007691 locus=Lus10007691.g ID=Lus10007691.BGIv1.0 annot-version=v1.0 MAVGNILGFATGAFSGWYKIFRFTLTTACDVDCANLKAAFYLDVVCIVITAYISISSAKEPSISLLHASTPVVEEEAVESSPVEEAFLWELFGTFGYFPA SVWTILLVTALNWIGWFPFLLFDTDWMGREIYGGDPDGGPSYSSGVRMGAFALMLNSVLLGITSVLMEKICRKWGAGFIWGLSNIFMAICFLSMLIIAYV AYHMGYLGHGEPPVGILVAALTVFAFLGIPLAITYSVPYALVSSRIEPLGLGQGLSMGVLNLAIVVPQVLVSVGSGPWDQLFGGGNSPAIAVGGLAALIG GVIAILGIPRFTAQKPRLLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10007691 [exp]	0	1
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	1.0	0.9560
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10029188 [exp]	2.0	0.8883
AT4G33440			Pectin lyase-like superfamily ...		Lus10014799 [exp]	2.4	0.8764
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10003061 [exp]	2.8	0.8683
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	4.2	0.8506
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10038218 [exp]	7.4	0.8249
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	9.5	0.8600
AT3G11690			unknown protein		Lus10029349 [exp]	18.9	0.7262
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	19.8	0.8014
AT5G58000			Reticulon family protein (.1)		Lus10035829 [exp]	20.3	0.8501

Compare expression of checked genes

Lus10007691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.