Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27600 484 / 5e-171 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT2G37090 202 / 4e-61 IRX9 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G67230 121 / 4e-30 IRX14-L, I14H IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G36890 112 / 9e-27 IRX14 irregular xylem 14, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032817 [exp] 758 / 0 AT1G27600 484 / 3e-171 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10019917 [exp] 206 / 2e-62 AT2G37090 417 / 3e-146 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10026487 [exp] 197 / 5e-59 AT2G37090 409 / 8e-143 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10015069 [exp] 129 / 6e-34 AT2G37090 236 / 9e-76 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10010268 [exp] 110 / 5e-26 AT5G67230 634 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041601 [exp] 108 / 2e-25 AT5G67230 632 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10011500 [exp] 89 / 2e-19 AT5G67230 379 / 6e-130 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10019325 [exp] 0 / 1 AT5G67230 335 / 5e-127 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107300 [exp] 524 / 0 AT1G27600 477 / 1e-168 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.006G240200 [exp] 363 / 9e-123 AT1G27600 374 / 2e-127 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.006G131000 [exp] 231 / 2e-72 AT2G37090 439 / 7e-155 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.016G086400 [exp] 224 / 1e-69 AT2G37090 473 / 4e-168 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G141500 [exp] 112 / 6e-27 AT5G67230 563 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G047500 [exp] 112 / 1e-26 AT5G67230 543 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03360 [flax] [poplar] Glyco_transf_43 Glycosyltransferase family 43
Representative CDS sequence Show only first row Show all	>Lus10007692 pacid=23164950 polypeptide=Lus10007692 locus=Lus10007692.g ID=Lus10007692.BGIv1.0 annot-version=v1.0 ATGCCTCTTCGGACTGATCTAGATCGATTGGAAATGGCATCTATCCGACGGACTCTCTCTCCAGCTCACCACGACCGTTCCCACATCAACGGCACCGCCG CACTCAACTCCCCGCTCTCCGTCACCAACAATTCCAAACACTCCTCCTCCGCGTCGTCCACTTACATAGCGCGACTCCTCGCAGCCGCAGCCTTCCCTCA CCGACGCAAAGCACCTTTCGGTAGATCCATCCTGTACAGATGTTTGCTCTTCTTCATTTTAGGTTGCGTGCTAGGTATGTTCCCGTTTGGACAGGTCGAT AATAATGATATCCATCGCGGCCAGGATTTCTCTGTAGAGATCAGGCCCTCTCATGGTGATCGTAGATTGGACGATGACGATGGTAACGTCCGCTCCTTTA CACTCGAAGATCTCCCTATCAAGACGGTCAATTTGGGTATTGATGATAAGCAGTCGTTAATCCAGGAGGCATCCTCCTCCCGCTTCGATTTTCTGCCGAG GAAGCAACTCATCGTCGTTACTCCGACTTATAATCGTGCATCGCAGGCTTATTTTTTAACTAGGTTAGGGCAAGTGCTGCGGTTGGTCCAGCCTCCTTTG TTGTGGATTGTAGTTGAAAGTCATGTTGCCTCCATGGAGACTGCGGATTTACTCAGGAAAACTAGCGTCATGTATAGGCATTTAGTGTGTACCAAGAATT CGACGGATTTGAAGGACAGAGGTGTCCATCAGAGGAATGTAGCTTTGGAGCACATAGAAAGGCATAAGCTCGATGGAATTGTTTACTTCGCGGATGATGA CAATGTGTATACGCTTGAATTGTTCGGCAGGCTTCGAGAAATTAGCCGATTTGGCACTTGGCCAGTTGCAATGCTTGCACAAAGCAAGAATAAAGCAATC CTTGAAGGTCCAGTGTGCAATGAAAGTCAGGTGATCGGGTGGCACACTAATGAGAAAAGCAAACGACTCCGAAGATTTCACGTTGATATGTCAGGTTTTG CTTTCAACAGCACAGTTTTGTGGGACGCAGAGAGATGGCAGCGCCCTTATAAAAATCCCATTAGGCAATTAGACACAGTGAAGGAGGGGTTCCAAGAGAG CACATTCATAGAGCAAGTGTTGCAGGATGAGAGTCAGATGGAAGGTGTTCCTTGGGGTTGCTCGAAGATACTTAATTGGCACCTCCATATAGATGTTAGT GGTAAAAAATACCCTCAAGGCTGGTTGCTCCAAAAGAACCTAGATGTCGTCCTCCCTGCCTAA
AA sequence Show only first row Show all	>Lus10007692 pacid=23164950 polypeptide=Lus10007692 locus=Lus10007692.g ID=Lus10007692.BGIv1.0 annot-version=v1.0 MPLRTDLDRLEMASIRRTLSPAHHDRSHINGTAALNSPLSVTNNSKHSSSASSTYIARLLAAAAFPHRRKAPFGRSILYRCLLFFILGCVLGMFPFGQVD NNDIHRGQDFSVEIRPSHGDRRLDDDDGNVRSFTLEDLPIKTVNLGIDDKQSLIQEASSSRFDFLPRKQLIVVTPTYNRASQAYFLTRLGQVLRLVQPPL LWIVVESHVASMETADLLRKTSVMYRHLVCTKNSTDLKDRGVHQRNVALEHIERHKLDGIVYFADDDNVYTLELFGRLREISRFGTWPVAMLAQSKNKAI LEGPVCNESQVIGWHTNEKSKRLRRFHVDMSGFAFNSTVLWDAERWQRPYKNPIRQLDTVKEGFQESTFIEQVLQDESQMEGVPWGCSKILNWHLHIDVS GKKYPQGWLLQKNLDVVLPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10007692 [exp]	0	1
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10005057 [exp]	1.4	0.9158
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	4.0	0.9011
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	4.0	0.9156
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10031032 [exp]	5.5	0.9056
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10025081 [exp]	6.7	0.8883
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	7.7	0.9146
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	8.5	0.9104
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10022152 [exp]	8.7	0.8775
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	9.2	0.9014
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	9.6	0.8785

Compare expression of checked genes

Lus10007692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.