Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37460 412 / 2e-143 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 338 / 4e-114 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 312 / 1e-104 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 295 / 3e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 290 / 2e-95 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 285 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 281 / 7e-92 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G44800 275 / 7e-90 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 270 / 2e-87 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 244 / 3e-77 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024424 [exp] 503 / 6e-179 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 487 / 6e-167 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024425 [exp] 388 / 8e-133 AT2G37460 417 / 1e-144 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 347 / 2e-117 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 346 / 3e-117 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 333 / 4e-112 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 331 / 2e-111 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 331 / 3e-111 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 328 / 6e-110 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082700 [exp] 427 / 1e-149 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 356 / 3e-121 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 342 / 2e-115 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 306 / 1e-101 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 306 / 2e-101 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 298 / 1e-98 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 298 / 2e-98 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 296 / 2e-97 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 288 / 1e-94 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G032500 [exp] 282 / 7e-92 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10007696 pacid=23153281 polypeptide=Lus10007696 locus=Lus10007696.g ID=Lus10007696.BGIv1.0 annot-version=v1.0 ATGGTGGTAAATGGGAAGCCAAATGGTGTTTTTGAAAGGTCGAAGCCCTTCTTGGCAGTCATCTTCCTCCAAGTTGGCCTTGCCGGGATGGACATTCTCT CCAAGGCTGCCCTCAATCAAGGGATGAGTAACTATGTTCTTGTTGTTTACCGTCATGCTGTAGCCACCATCGTCATCGCTCCTTTCGCCCTCGTTCTTGA TCGGAAAGTGAGGCCTAAGATGACATGGTCGATAATGATGAAGGTAGCAATGCTGGGCTTACTAGAGCCAGTAATAGACCAAAACTTGTACTTCCTAGGA ATGAAGTACACAACAGCAACATTTGCAGCTGCCATCATCAACATCCTCCCTGCCATTACTTTTGTAATGGCTTGCATTGTCGGGCTGGAGAAAGTTGGAA TGAAGTCAGTACATAGTCAAGCAAAGGTTGGTGGAACAATAGCAACAGTTGGAGGAGCCATGGTGATGACAGTGATCAAAGGTCCAGTTGTCGAGTTGTT TTGGACAAAAGGAAGGTCCTTTCATGGTCAAACTACTGCAGGCAGTGGCGGGGTTGACCTTCATAGTTCCATCAAAGGTGCCCTTATGATCACAGTGGGC TCTTTCAGTTGGGCTGGTTTTGTTATTCTCCAAGCGATCACACTGAATACATATCCAGCAGAATTGTCCCTAACAGTGTTGATTTGCGTGATGGGGACAG TACAAGGGGCAATAGTGGCACTTGTGATGGAAAGAGGGAATCCTCAAGTTTGGGCTCTTCATTGGGACACCAAGCTACTCGCTGCTGTTTACAGTGGAGT AGTGATGAAAGTAAGAGGCCCAGTATTCGTGACAGCATTCAGCCCACTGTGTATGGTATTGGTGGCGATAATGAGCTCCATCATCTTCGCTGAACAAATG TTCATTGGAAGGGTAATAGGAGCTGCAATTATAGTAGCAGGCTTGTACCTTGTTGTCTGGGGTAAAAGCAATGACTACTACCATTCTTCTTCCAACGATA ATGACCAACTTGTGATCCCAACTACTAATGGATGTTGTACTAGTACTAATAGTGGAAGAGATCATCAGATCAGTTGCAACGAGAGCCACCAACATGATAA TAATCATGGTGGTGATGATGCTATGATGACAATTGAAGAATCATCATCTGCAGTTCATGTCGTACGCAAGGATAACAAGTGA
AA sequence Show only first row Show all	>Lus10007696 pacid=23153281 polypeptide=Lus10007696 locus=Lus10007696.g ID=Lus10007696.BGIv1.0 annot-version=v1.0 MVVNGKPNGVFERSKPFLAVIFLQVGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALVLDRKVRPKMTWSIMMKVAMLGLLEPVIDQNLYFLG MKYTTATFAAAIINILPAITFVMACIVGLEKVGMKSVHSQAKVGGTIATVGGAMVMTVIKGPVVELFWTKGRSFHGQTTAGSGGVDLHSSIKGALMITVG SFSWAGFVILQAITLNTYPAELSLTVLICVMGTVQGAIVALVMERGNPQVWALHWDTKLLAAVYSGVVMKVRGPVFVTAFSPLCMVLVAIMSSIIFAEQM FIGRVIGAAIIVAGLYLVVWGKSNDYYHSSSNDNDQLVIPTTNGCCTSTNSGRDHQISCNESHQHDNNHGGDDAMMTIEESSSAVHVVRKDNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10007696 [exp]	0	1
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10035274 [exp]	2.0	0.9215
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	3.7	0.9189
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	7.1	0.9152
AT5G44265			Bifunctional inhibitor/lipid-t...		Lus10017710 [exp]	7.1	0.8670
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	7.5	0.9109
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	12.0	0.8937
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001394 [exp]	13.8	0.9020
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	15.2	0.8426
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	16.2	0.8828
AT5G42785			unknown protein		Lus10001961 [exp]	17.9	0.8625

Compare expression of checked genes

Lus10007696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.