Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30790 1261 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007701 [exp] 1963 / 0 AT4G30790 1493 / 0.0 unknown protein Lus10005509 [exp] 1936 / 0 AT4G30790 1486 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103000 [exp] 1412 / 0 AT4G30790 1392 / 0.0 unknown protein Potri.006G180800 [exp] 1349 / 0 AT4G30790 1261 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007700 pacid=23153276 polypeptide=Lus10007700 locus=Lus10007700.g ID=Lus10007700.BGIv1.0 annot-version=v1.0 ATGAGTTCAAGCATCACACAAGGGTTGGTTCATCAGGGAAAGCTGCTTCTCCACATAGCAGAAAACGGCCATTCGTTTGAGCTTGATTGCGATGAGACTA CCCTTGTCGATGCAGTTATGCGGTATGTGGAATCTTATTCTGGGATTAACTTGAATGATCAGCTTGTTCTGTGTTTGGATATGAAACTTGAACCCCATCG CCCGCTGTCTGGTTACAAGCTTCCATCCAGCAATAGAGAAGTGTTCATATTCAACAAAGCAAGGCTTCAGAACAATTCCCCACCACCTGCTCCGGAGCTG GTGAATGTAGTTGAAGTTTCGGACCCTCCGTCACCAGCAGCTAGTCACGAACCACATCCTTTGGACGACACTACAGACCCTGCATTGAAGGCTTTGCCGT CTTACGAGAGGCAGTTTCGGTACCATTTCCAGAGGGGTCATGCAATTTACAGTAGAACTCAGGTGAAGTATGAAACTTCTGAGAGGCTATTGAGAGAACA AAAGGTTCAGGAGAGGGCTTTGGAGGTTGGTAGGGGTAATCTGGATCAGTACTATAAGGTCATTCACCAGAATTACGTGGAGTTCATGAAGCGATATACA CAGCAGCATCGGTTTCATTCAGAACTCCTGCTGAACTTGGGAAGGGATTTGGAGAAGCTGAGGTCTGTAAAACTTCATCCAGCTTTGCAGATTGGTTCTC GCAAGTGTTTAATGGATTTCGTCAAGGAAGAGACCTTGCGCAAGGCTGTAGAGAATTGTAGCAACTCTCATAAACAATTTGAGAAGAAGGTTATAGAGTT TAAGCAGATGTTTGGCGACGTGAAGCGCAAGGTGGAGGAGTTATTTGCCTCGCGGGCTTCTGTTCCAATAAAAAACTTGGAGCTAACAATCAAAGAGCAT CAGCGGTTCATAAATGAACAGAAGAGTATAATGCAGTCTTTGAGCAAAGATGTAAACACAGTAAAGAAATTAGTGGATGACTGCTTATCCAGCCAATTAT CATCTTCTCTTCGGCCTCATGATGCTGTTTCAGCATTGGGTCGTATGTATGATGTCCATGACAAGAACCACCTGCCCAAGATGGAAAATTGCAGTCGTTC AATTTGCACCCTACTTGACTTTTGCAAGGAAAAGAAGAATGAAATGAACGTCTTTGTGCATGATTACATGCAAAAGATAACTTATATTTCTTATATAATC AAAGATGCAAAGTTACAGTTCCCTGTTTTCAAAGAAGCGATGGTACGCCAGGATGATCTATTTACCGACCTGAAGCTGGTTCGAGGAATTGGTCCTTCCT ACAGAGCCTGCTTTGCCGAGATAGTAAGAAGAAAGGCTTCAATGAAAATATACATGGGTATGGCCGGGCAACTGGCTGAAAGGCTCGCTACGAAAAGGGA GGCCGAGATCAGGAGACGAGAGGAATTTATAAAAGCAAACAGTGTGTATATACCAAGGGATATCTTGGCATCGATGGGGCTATACGATACTCCAAGCCAG TGTGATGTCAATGTTGCTCCTTTCGACACTAATTTGCTCAATATTGACCTTGCTGACCTGGACCGTTATGCCCCAGAGTATTTAGCTGCTCTGCCTTATA AGGGTGATAAGCAGGGAAACTTGAAAAGTTCGTTTTCTACTTCTAATGAGAGCTCCCATTCAGCTGAGGTAGACGAAGTTTCAGTGGATAATATCTCGAG AGGCGATTCTGACGAGCTTCTTGAGGGTTGTGATTTAGTAGATATTGCTGGAACAAGCAGAATGGAGGTTGAAAATGCAAAGTTGAAAGCCGAAGTTGCT TCGAAAATAGCCCTAATCTGTTCTCTCCTTCCAGATATTGAATATGAGTTGCTTGACGATAGTAAAACCGAGAGCGTGTTAAAAAATGCAGCAGAGAAGA CGGCTGAGGCTTTGCGACTGAAAGATGAGTATGGGAAGCATCTGCTTTCTATCCTTAAGGAAAAGAAAACCCAGTGTACAGCATACGAGAAGCGGATACA AGAGCTAGAGCAGAGATTGTCTGATCAATATATGCAGGAGCAGAAACTTGTGAATGATAAAGACGCATCTGATTCTTCTCTTTCAGCTACAACTATTGGT GATAACAAACCTGAGCTCTCAAGTGATGGAGAAACCCAGTTGCCATATTCATCTACTTCAGAACCCATGGATGAGGTCTCTTGTGTTTCTAATTTTCTGG ATACAAAGTTGGGGCGTTTCACTAGGCAACAAAGCAAAGGTCGGGAAGATGAACATATGATGGATTCCTCAGGAATCTTGAATTCGCAGTTAGACTCTTC AATGCCAGAACCACAAGGAGAAGAGCTGCAGGCTGGTGACAAAGAAGGGAAAGACAAGATGGCGGGGCAATTGGGCATGTCGATAGCAAATAGCTGCACA GCTGAGAGCACGCCCGAGCTGGACCTGCCTTCTGATCCTGCCATTGAAGATAAAACTACTGGGGACCTTTTGGAGTTGCGGGATGAACTTGCAGACAAAT CGAACCAGTTGAGTGAAATGGAAGCTAAACTTGGAGCTGCTATAGACAAGGTTGCCATGCTTACTAAAGAGTTGGAAGCTAGTCGAAAGCTTCTAAACGA ATCTCAGATGAATTGTGCTCACCTGGAAAATTGTTTGCATGAGGCCAGAGAGGAGGCCCAAACTCACCTCTGTGCGGCTGATAGAAGGGCTTCAGAATAC AGTGCTCTACGTGCATCTGCTGTGAAAATGCGTGGTCTTTTTGAAAGACTCAGGAACTGTGTATATGCCCCTGGTTCAGTCACTGCGTTTGCAGATTCAT TGCGCTCTTTAGCTCAATCTTTGGCCAACTCCCTCAATGAGAATGAAGAGGATGGAACTGTGGAGTTCCGGAAATGCATAAAGGTTCTTGCAGAGAAGGT TACGTTCTTGTCCAGGCACCGTGATGAGCTACTAGACAAGTACCCAAAGCTAGAATCTGCAAATGAACAACTGTTGAAGGACATGGAGGAGAAGAAAGAG CTGGTTACCACTCTATACAAAAAGCACCAACTTGAGAAACAGTCATAG
AA sequence Show only first row Show all	>Lus10007700 pacid=23153276 polypeptide=Lus10007700 locus=Lus10007700.g ID=Lus10007700.BGIv1.0 annot-version=v1.0 MSSSITQGLVHQGKLLLHIAENGHSFELDCDETTLVDAVMRYVESYSGINLNDQLVLCLDMKLEPHRPLSGYKLPSSNREVFIFNKARLQNNSPPPAPEL VNVVEVSDPPSPAASHEPHPLDDTTDPALKALPSYERQFRYHFQRGHAIYSRTQVKYETSERLLREQKVQERALEVGRGNLDQYYKVIHQNYVEFMKRYT QQHRFHSELLLNLGRDLEKLRSVKLHPALQIGSRKCLMDFVKEETLRKAVENCSNSHKQFEKKVIEFKQMFGDVKRKVEELFASRASVPIKNLELTIKEH QRFINEQKSIMQSLSKDVNTVKKLVDDCLSSQLSSSLRPHDAVSALGRMYDVHDKNHLPKMENCSRSICTLLDFCKEKKNEMNVFVHDYMQKITYISYII KDAKLQFPVFKEAMVRQDDLFTDLKLVRGIGPSYRACFAEIVRRKASMKIYMGMAGQLAERLATKREAEIRRREEFIKANSVYIPRDILASMGLYDTPSQ CDVNVAPFDTNLLNIDLADLDRYAPEYLAALPYKGDKQGNLKSSFSTSNESSHSAEVDEVSVDNISRGDSDELLEGCDLVDIAGTSRMEVENAKLKAEVA SKIALICSLLPDIEYELLDDSKTESVLKNAAEKTAEALRLKDEYGKHLLSILKEKKTQCTAYEKRIQELEQRLSDQYMQEQKLVNDKDASDSSLSATTIG DNKPELSSDGETQLPYSSTSEPMDEVSCVSNFLDTKLGRFTRQQSKGREDEHMMDSSGILNSQLDSSMPEPQGEELQAGDKEGKDKMAGQLGMSIANSCT AESTPELDLPSDPAIEDKTTGDLLELRDELADKSNQLSEMEAKLGAAIDKVAMLTKELEASRKLLNESQMNCAHLENCLHEAREEAQTHLCAADRRASEY SALRASAVKMRGLFERLRNCVYAPGSVTAFADSLRSLAQSLANSLNENEEDGTVEFRKCIKVLAEKVTFLSRHRDELLDKYPKLESANEQLLKDMEEKKE LVTTLYKKHQLEKQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30790			unknown protein		Lus10007700 [exp]	0	1
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	1.4	0.8831
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	2.8	0.8473
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	4.9	0.8440
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	7.1	0.8288
AT2G46620			P-loop containing nucleoside t...		Lus10035073 [exp]	8.1	0.8002
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Lus10038129 [exp]	12.6	0.8306
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	13.4	0.7837
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	13.5	0.8226
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	15.5	0.7475
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10043402 [exp]	18.7	0.6889

Compare expression of checked genes

Lus10007700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.