Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30790 1414 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005509 [exp] 2217 / 0 AT4G30790 1486 / 0.0 unknown protein Lus10007700 [exp] 1948 / 0 AT4G30790 1327 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103000 [exp] 1579 / 0 AT4G30790 1392 / 0.0 unknown protein Potri.006G180800 [exp] 1530 / 0 AT4G30790 1261 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10377 [flax] [poplar] ATG11 Autophagy-related protein 11
Representative CDS sequence Show only first row Show all	>Lus10007701 pacid=23153280 polypeptide=Lus10007701 locus=Lus10007701.g ID=Lus10007701.BGIv1.0 annot-version=v1.0 ATGAGTTCAAGCATCACACAAGGGTTGGTTCATCAGGGAAAGCTGCTTCTCCACATAGCAGAAAACGGCCATTCCTTTGAGCTTGATTGCGATGAAACCA CCCTTGTCGAAGCAGTTATGCGGTATGTGGAATCTTATTCTGGGATTAACTTGAATGATCAGCTTGTTCTGTGTTTGGATATGAAACTTGAACCCCATCG CCCGCTGTCTGGTTACAAGCTTCCATCCAGCAATAGAGAAGTGTTCATATTCAACAAAGCAAGGCTTCAGAACAATTCCCCACCACCTGCTCCGGAGCTG GTGAATGTAGTTGAAGTTTCGGACCCTCCGTCACCAGCAGCTAGTCACGAACCACATCCTTTGGACGACACTACAGACCCTGCATTGAAGGCTTTGCCGT CTTACGAGAGGCAGTTTCGGTACCATTTCCAGAAGGGTCATGCAATTTACAGTAGAACTCAGGTGAAGTATGAAACTTCTGAGAGGCTATTGAGAGAACA AAAGGTTCAGGAGAGGGCTTTGGAGGTTGGTAGGGGTAATCTGGATCAGTACTATAAGGTCATTCACCAGAATTACGTGGAGTTCATGAAGCGATATACA CAGCAGCATCGGTTTCATTCAGAACTCCTGCTGAACTTGGGAAGGGATTTGGAGAAGCTGAGGTCTGTAAAACTTCATCCAGCTTTGCAGATTGGTTCTC GCAAGTGTTTAATGGATTTCGTCAAGGAAGAGACCTTGCGCAAGGCTGTAGAGAATTGTAGCAACTCTCATAAACAATTTGAGAAGAAGGTTATAGAGTT TAAGCAGATGTTTGGCGACGTGAAGCGCAAGGTGGAGGAGTTATTTGCCTCGCGGGCTTCTGTTCCAATAAAAAACTTGGAGCTAACAATCAAAGAGCAT CAGCGGTTCATAAATGAACAGAAGAGTATAATGCAGTCTTTGAGCAAAGATGTAAACACAGTAAAGAAATTAGTGGATGACTGCTTATCCAGCCAATTAT CATCTTCTCTTCGCCCTCATGATGCTGTTTCAGCATTGGGTCGTATGTATGATGTCCATGACAAGAACCACCTACCCAAGATGGAAAATTGCAGTCGTTC AATTTGCACACTACTTGACTTTTGCAAAGAAAAGAAGAATGAAATGAACGTCTTTGTGCATGATTACATGCAAAAGATAACTTATATTTCTTATATAATC AAAGATGCAAAGTTACAGTTCCCTGTTTTCAAAGAAGCAATGGTACGCCAGGATGATCTATTTACCGACCTGAAGCTGGTTCGAGGAATTGGTCCTTCCT ACAGAGCCTGCTTTGCCGAGATAGTAAGAAGAAAGGCTTCAATGAAAATATACATGGGTATGGCCGGGCAACTGGCTGAAAGGCTCGCTACGAAAAGGGA GGCCGAGATCAGGAGACGAGAGGAATTTATAAAAGCAAACAGTGCGTATATACCAAGGGATATCTTGGCATCGATGGGGCTGTACGATACTCCAAGCCAG TGTGATGTCAATGTTGCTCCGTTTGACACTAATTTGCTCAATATTGACCTTGCTGACCTGGACCGTTATGCCCCAGAGTATTTAGCTGCTCTGCCTTATA AGGGTGATAAGCAGGGAAACTTGAAAAGTTCGTTTTCTACTTCTAATGAGAGCTCCCATTCAGCTGAGGTAGACGAAGTTTCAGTGGATAATATCTCGAG AGGCGATTCTGACGAGCTTCTTGAGGGTTGTGATTTAGTAGAAATTGCTGGAACAAGCAGAATGGAGGTTGAAAATGCAAAATTGAAAGCCGAACTTGCT TCGAAAATAGCCCTAATCTGTTCTCTCCTTCCAGATATTGAATATGAGTTGCTTGACGATAGTAAAACCGAGAGCGTGTTAAAAAATGCAGCAGAGAAGA CGGCTGAGGCTTTGCGACTGAAAGATGAGTATGGGAAGCATCTGCTTTCTATCCTTAAGGAAAAGAAAACCCAGTGTACAGCATACGAGAAGCGGATACA AGAGCTAGAGCAGAGATTGTCTGATCAATATATGCAGGAGCAGAAACTTGTGAATGATAAAGACGTATCTGATTCTGCTCTTTCAGCTACAACTATTGGT GGTAACAAACCTGAGATCTCAAGTGATGGAGAAACCCAGTTGGCATATTCATCTACTTCAGAACCCATGGATGAGGTCTCTTGTGTTTCTAATTTTCTGG ATACAAAGTTGGGGCGTTTCACTAGGCAACAAAGCAAAGGTCGGGAAGATGAACATATGATGGATTCCTCGGGAATCTTGAATTCACAGTTAGACTCTTC AATGCCAGAACCACAAGGAGAAGAGCTGCAGGCTGGTGACAAAGGAGGGAAAGACAAGATGGCGGGGCAATTGGGCATGTCGATAGCAAATAGCTGCACA GCTGAGAGCACGCCCGAGCTGGACCTGCCTTCTGATCCTGCCATTGAAGATAAAACTACTGGGGACCTTTTGGAGTTGCGGGATGAACTTGCAGACAAAT CGAACCAGTTGAGTGAAATGGAAGCTAAACTTGGAGCTGCTATAGACAAGGTTGCCATGCTTACTAAAGAGTTGGAAGCTAGTCGAAAGCTTCTAAACGA ATCTCAGATGAATTGTGCTCACCTGGAAAATTGTTTGCATGAGGCCAGAGAGGAGGCCCAAACTCACCTCTGTGCGGCTGATAGAAGGGCTTCAGAATAC AGTGCTCTACGTGCATCTGCTGTGAAAATGCGTGGTCTTTTTGAAAGACTCAGGAACTGTGTATATGCCCCTGGTTCAGTCACTGCGTTTGCAGATTCAT TGCGCTCTTTAGCTCAATCTTTGGCCAACTCCCTCAATGAGAATGAAGAGGATGGAACTGTGGAGTTCCGGAAATGCATAAAGGTTCTTGCAGAGAAGGT TACGTTCTTGTCCAGGCACCGTGATGAGCTACTAGACAAGTACCCAAAGCTAGAATCTGCAAATGAACAACTGTTGAAGGACATGGAGGAGAAGAAAGAG CTGGTTACCACTCTATACAAAAAGCACCAACTTGAGAAACAGGCAAACAAAGAGAGGATTTCATTCTGCCGATTTGAAGTCCATGAGATTGCTGCATTCG TTCTCAACTCCAGTGGCCATTATGTGGCAATCAGCAGGAACTGCTCAAACTACTATTTATCTGCAGAATCAGTGGCATTGTTCACTGACCATCTTCCCAG CCAACCTAGCCATATTGTTGGACAGATGGTGCATATCGAACGTCAAATTGTGAAGCCACTGCTCACTCGAGCTAACTCGTCTCCAATGACCAGGCCTGAC CATGGAAGATCAGTAGCAGCAGCAGGAGAACATGGTAGTGGTCGCCTGAACTCTGACGTGATGGGAGCTGACCGACGATTGGCTGTCAACTTGGGACCGG GGTCATCTTCGTATAACCCTTTTAACCTCCCAATTGGTTGTGAATATTTCGTAGTGACGATAGCTATGCTACCTGATACCACCATTCATTCTCCATCATC CACTTCCTGA
AA sequence Show only first row Show all	>Lus10007701 pacid=23153280 polypeptide=Lus10007701 locus=Lus10007701.g ID=Lus10007701.BGIv1.0 annot-version=v1.0 MSSSITQGLVHQGKLLLHIAENGHSFELDCDETTLVEAVMRYVESYSGINLNDQLVLCLDMKLEPHRPLSGYKLPSSNREVFIFNKARLQNNSPPPAPEL VNVVEVSDPPSPAASHEPHPLDDTTDPALKALPSYERQFRYHFQKGHAIYSRTQVKYETSERLLREQKVQERALEVGRGNLDQYYKVIHQNYVEFMKRYT QQHRFHSELLLNLGRDLEKLRSVKLHPALQIGSRKCLMDFVKEETLRKAVENCSNSHKQFEKKVIEFKQMFGDVKRKVEELFASRASVPIKNLELTIKEH QRFINEQKSIMQSLSKDVNTVKKLVDDCLSSQLSSSLRPHDAVSALGRMYDVHDKNHLPKMENCSRSICTLLDFCKEKKNEMNVFVHDYMQKITYISYII KDAKLQFPVFKEAMVRQDDLFTDLKLVRGIGPSYRACFAEIVRRKASMKIYMGMAGQLAERLATKREAEIRRREEFIKANSAYIPRDILASMGLYDTPSQ CDVNVAPFDTNLLNIDLADLDRYAPEYLAALPYKGDKQGNLKSSFSTSNESSHSAEVDEVSVDNISRGDSDELLEGCDLVEIAGTSRMEVENAKLKAELA SKIALICSLLPDIEYELLDDSKTESVLKNAAEKTAEALRLKDEYGKHLLSILKEKKTQCTAYEKRIQELEQRLSDQYMQEQKLVNDKDVSDSALSATTIG GNKPEISSDGETQLAYSSTSEPMDEVSCVSNFLDTKLGRFTRQQSKGREDEHMMDSSGILNSQLDSSMPEPQGEELQAGDKGGKDKMAGQLGMSIANSCT AESTPELDLPSDPAIEDKTTGDLLELRDELADKSNQLSEMEAKLGAAIDKVAMLTKELEASRKLLNESQMNCAHLENCLHEAREEAQTHLCAADRRASEY SALRASAVKMRGLFERLRNCVYAPGSVTAFADSLRSLAQSLANSLNENEEDGTVEFRKCIKVLAEKVTFLSRHRDELLDKYPKLESANEQLLKDMEEKKE LVTTLYKKHQLEKQANKERISFCRFEVHEIAAFVLNSSGHYVAISRNCSNYYLSAESVALFTDHLPSQPSHIVGQMVHIERQIVKPLLTRANSSPMTRPD HGRSVAAAGEHGSGRLNSDVMGADRRLAVNLGPGSSSYNPFNLPIGCEYFVVTIAMLPDTTIHSPSSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30790			unknown protein		Lus10007701 [exp]	0	1
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	1.7	0.8689
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	3.2	0.8753
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	4.4	0.8861
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	8.6	0.8039
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	10.2	0.8622
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	13.4	0.8659
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	14.3	0.8246
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	14.5	0.8043
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	16.7	0.8500
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	21.0	0.7751

Compare expression of checked genes

Lus10007701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.