Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71890 556 / 0 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G22710 556 / 0 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT5G06170 542 / 0 ATSUC9 sucrose-proton symporter 9 (.1) AT1G71880 538 / 0 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G66570 533 / 0 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT2G14670 528 / 0 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 523 / 0 ATSUC6 sucrose-proton symporter 6 (.1) AT1G09960 411 / 2e-139 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 391 / 1e-130 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017910 [exp] 558 / 0 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 534 / 0 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028614 [exp] 507 / 6e-177 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 494 / 1e-171 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 492 / 7e-171 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 491 / 1e-170 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10032815 [exp] 427 / 1e-145 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10014821 [exp] 406 / 6e-139 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10009428 [exp] 355 / 3e-119 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085800 [exp] 566 / 0 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.013G115200 [exp] 554 / 0 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 436 / 3e-149 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 381 / 2e-126 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 378 / 2e-125 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10007702 pacid=23153282 polypeptide=Lus10007702 locus=Lus10007702.g ID=Lus10007702.BGIv1.0 annot-version=v1.0 ATGGAAACCGTAGCTGCGTCGCCGCCGTCAGCAAGCAGCTATAAGAAAATAATCGCCGTGGCTTCAATCGCCGCCGGAATCCAGTTCGGATGGGCCCTCC AATTGTCCCTTCTCACTCCCTACGTCCAGCTCCTCGGGATTCCCCACAAGTGGTCCGCACTGATTTGGCTATGCGGCCCTATTTCAGGGATAGTGGTTCA ACCCATTGTCGGCTTCTTCAGCGACCGGTCCACCAGCCGGTTCGGCCGTCGTAGCCCCTTCATCTTCATGGGCACCATCCTAGTCGTCGTAGCCGTTTTC TTAATCGGCTACGCCGCCGACATCGGCCATCGTTACGGTGACACTCTGGATAAGGGCAAGCCCAGGGTTAGAGCTATCACCGTCTTCGTTGTTGGGTTCT GGGTCCTGGACGTCTCCAACAACATGCTTCAGGGACCGTGTCGGGCCTTGCTGGGCGATCTCTCTGGCGACAGCGAGCGGCTCACCCGGATCTCAAACTC CGCGTTTTCCTTCTTCATGGGCGCCGGAAACATCATCGGGTACCTCGCCGGTGCCCAAGATGGCCTCCACAAAATATTCCGCTTCACAAATTCCACCGCG TGCGACGTGTACTGTGCGAATCTGAAGTCGTGCTTCTTTATATCGGCGGCGCTACTCATAGTCCTGACGGTCATTGCATTGGCGTACGTCCGCGAGCAAC CTTGGAGTCCCGAAATCGAACTGGAGTCAGGTGGCGTGGCTACGGAGAAGAATGAACAAGGAGAGGGAGGAGCAGTGGGTGGGTTGATGAGTTTTGTGGG AGCGTTGAAAAGTCTTGATAGGCCTACGTGGATGCTTTTGCTGGTGACGTTTCTGAACTGGCTTGCGTGGTTTCCCTGGGTGCTATACGACACCGATTGG ATGGGCAGAGAAGTGTACGGAGGAGTTTCGGAAGGGAATGATGCGGCTAGGGTGCATCTCTACGACAAAGGAGTCCGGGCAGGGTCGTTGGGGTTGATGA TCAATTCCATCGTCCTTTTACTCGTCTCGATCGCGATTGATCCCTTGTCCAAAAAATTGGGAGTCAAATTCCTATGGGGAGGCGTCAATTTAATACTCGG TATCTGCCTAGCCATGACGGTGCTCATCACGAAAAATGCGGAATCGGACCGGCGACATGGCGCGCTGCTTCCATCGTCGGGGGTTAAGAGCGGGGCTTTG GCGGTGTTTGGGATATTGGGGCTGCCGCTGGCGGTGACGTACAGCATCCCTTTCGCGATGGCTTCGATCTACTCGCACGGGTCTGGTGCAGGGCAGGGTC TGTCGCTTGGAGTACTGAATTTGGCCATCTGTCTACCACAGATGGTAATTTCTTTTGCGAGTGGGCCGTTTGATGCTGCATTCGGCGGCGGAAATTTGCC CGGGTTTGTGGTCGGAGCTGTGGTGGCGATTGTGAGTGCAATTTGTGCGGCTACTCTATTACCGAAGCCGAGGCTCACGTCGTGA
AA sequence Show only first row Show all	>Lus10007702 pacid=23153282 polypeptide=Lus10007702 locus=Lus10007702.g ID=Lus10007702.BGIv1.0 annot-version=v1.0 METVAASPPSASSYKKIIAVASIAAGIQFGWALQLSLLTPYVQLLGIPHKWSALIWLCGPISGIVVQPIVGFFSDRSTSRFGRRSPFIFMGTILVVVAVF LIGYAADIGHRYGDTLDKGKPRVRAITVFVVGFWVLDVSNNMLQGPCRALLGDLSGDSERLTRISNSAFSFFMGAGNIIGYLAGAQDGLHKIFRFTNSTA CDVYCANLKSCFFISAALLIVLTVIALAYVREQPWSPEIELESGGVATEKNEQGEGGAVGGLMSFVGALKSLDRPTWMLLLVTFLNWLAWFPWVLYDTDW MGREVYGGVSEGNDAARVHLYDKGVRAGSLGLMINSIVLLLVSIAIDPLSKKLGVKFLWGGVNLILGICLAMTVLITKNAESDRRHGALLPSSGVKSGAL AVFGILGLPLAVTYSIPFAMASIYSHGSGAGQGLSLGVLNLAICLPQMVISFASGPFDAAFGGGNLPGFVVGAVVAIVSAICAATLLPKPRLTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	0	1
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	1.4	0.9385
AT5G05180			unknown protein		Lus10034251 [exp]	3.2	0.9250
AT2G32210			unknown protein		Lus10031204 [exp]	3.5	0.9027
AT2G28780			unknown protein		Lus10024409 [exp]	3.9	0.9166
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	4.0	0.9087
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10001506 [exp]	4.5	0.8903
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	5.1	0.9013
AT5G42680			Protein of unknown function, D...		Lus10021759 [exp]	5.2	0.8763
					Lus10022598 [exp]	5.5	0.9086
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	5.5	0.9035

Compare expression of checked genes

Lus10007702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.