Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57820 49 / 3e-07 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005511 [exp] 189 / 1e-60 ND / Lus10035820 [exp] 112 / 2e-29 AT5G18260 47 / 3e-06 RING/U-box superfamily protein (.1) Lus10002316 [exp] 47 / 6e-06 AT1G14180 48 / 1e-05 RING/U-box superfamily protein (.1.2) Lus10008046 [exp] 40 / 0.0007 AT4G39140 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4.5) Lus10036764 [exp] 39 / 0.001 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180600 [exp] 70 / 4e-14 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007703 pacid=23153277 polypeptide=Lus10007703 locus=Lus10007703.g ID=Lus10007703.BGIv1.0 annot-version=v1.0 ATGAGCGGGAAAGCACCATCAACCAAGAACCGTTCCAAGGCGAAAGATTCTTCTTCTTCTTCTTCTTCCTCTTCAGGGACAAAGCTGAAGAAGGAAATTT CAACGACGTCGGAAAATCCGGCGAAGAATGTGGTTCAATGTGGTGGTGCAGGGGAAATGGTGAAAATAGGTGGACGACATAAGAAGAAGCGAGGAGGAGG TGGCAAGAAGCAAAAGGTGGTTGAATCTTGGAAATGGATTATGAATAATAATAACAATAATAAGGCATTCTCGTCGAGGCAGCAACAGAAGAATAAGAAG AAGAAGAACCCATGGCTGGAAGTTGAACGAGGAATGGCTTATTATTTTAAGTGGGATGAAGGTTTGGTAGAAGAAACACAAGATTCGAAACTTGGACAGA AACAGAACTGCTCCATATGTGGGAGAGATGTTTCATATGCACCAATCCCACCAGAGACAGAGTCAGGGACTTACAATTTCCCAGAAGTTGCTGTGCTTTC TTGCGGCCATGTCTTCCACATGATCTGCTTTAGCTCCTGTAACCACTCTACTGATCCTTCCTGCTTCAAATGTTCAACCCCTCAACAATTTTGA
AA sequence Show only first row Show all	>Lus10007703 pacid=23153277 polypeptide=Lus10007703 locus=Lus10007703.g ID=Lus10007703.BGIv1.0 annot-version=v1.0 MSGKAPSTKNRSKAKDSSSSSSSSSGTKLKKEISTTSENPAKNVVQCGGAGEMVKIGGRHKKKRGGGGKKQKVVESWKWIMNNNNNNKAFSSRQQQKNKK KKNPWLEVERGMAYYFKWDEGLVEETQDSKLGQKQNCSICGRDVSYAPIPPETESGTYNFPEVAVLSCGHVFHMICFSSCNHSTDPSCFKCSTPQQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57820			zinc ion binding (.1)		Lus10007703 [exp]	0	1
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	4.6	0.9155
					Lus10000801 [exp]	7.7	0.7481
					Lus10025095 [exp]	10.0	0.8686
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10039622 [exp]	11.5	0.7916
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035700 [exp]	11.9	0.8666
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039720 [exp]	15.5	0.7938
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	15.7	0.8401
AT1G24735			S-adenosyl-L-methionine-depend...		Lus10021804 [exp]	16.4	0.8549
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10012760 [exp]	17.7	0.8528
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10040339 [exp]	18.1	0.7928

Compare expression of checked genes

Lus10007703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.