Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24090 150 / 2e-47 Ribosomal protein L35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102700 [exp] 176 / 2e-57 AT2G24090 162 / 4e-52 Ribosomal protein L35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01632 [flax] [poplar] Ribosomal_L35p Ribosomal protein L35
Representative CDS sequence Show only first row Show all	>Lus10007706 pacid=23153289 polypeptide=Lus10007706 locus=Lus10007706.g ID=Lus10007706.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTAACCTTGCTCTCTGTCAATCCCACGCTTTGTTCACTACCAGCCCGAGTCTCTCTCGGGTCGACCCGACTCGCCTCTTTCACCAAGTCCA ACAACAGCTCGCCGAAGCTCAGCTTCACGCCCATCATCTCCTCGGCTCCTCTCTCGCTTTTCTCGCCCAAACCTTACTCTATCGCCTCTTTGTCTAAGAG ACTCAAATCTCTCACCGTCTACGCCGCCAAAGGATACAAGTTGAAGACCCATAAGGCCTCAGCGAAGAGGTTTCGGGTGACTGGGAGAGGGAAGATTGTT AGGAGGAGGGCTGGAAAGCAGCATTTGCTGGCTAAGAAGAACACCAAGAGGAGATTGCGTTTATCCAAAATGACTCAAGTCGACCGGAGTGACTACAACA ACGTGATTGGTGCACTGCCGTACTTGAAAGTGAACAGATTGGCAAAGTAG
AA sequence Show only first row Show all	>Lus10007706 pacid=23153289 polypeptide=Lus10007706 locus=Lus10007706.g ID=Lus10007706.BGIv1.0 annot-version=v1.0 MASLTLLSVNPTLCSLPARVSLGSTRLASFTKSNNSSPKLSFTPIISSAPLSLFSPKPYSIASLSKRLKSLTVYAAKGYKLKTHKASAKRFRVTGRGKIV RRRAGKQHLLAKKNTKRRLRLSKMTQVDRSDYNNVIGALPYLKVNRLAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	0	1
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	1.7	0.9629
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	2.0	0.9659
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	2.2	0.9602
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	3.7	0.9630
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	4.5	0.9629
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10020945 [exp]	5.3	0.9341
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	6.0	0.9563
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10025445 [exp]	8.4	0.9493
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	8.5	0.9536
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	12.2	0.9461

Compare expression of checked genes

Lus10007706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.