Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30840 347 / 2e-118 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007274 [exp] 45 / 5e-05 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 45 / 5e-05 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180300 [exp] 394 / 3e-137 AT4G30840 373 / 9e-129 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007707 pacid=23153296 polypeptide=Lus10007707 locus=Lus10007707.g ID=Lus10007707.BGIv1.0 annot-version=v1.0 ATGGCGGTAAACGGCGTCCCTCAAACGCAAATCTACCGGCTACCGCAATCCAGATACATCGACGGAGTCCGATGGCTACCTTCCATTTATCCACTCCACC AATCCTCCATCATAGCCTTCTTCGACACCGACGAAGACTCACCTTCGCTGGAGGTCCACTCCCTCGACAACGAATCATCCAAATCCCTATCCTTGGTCTC GTCGTGGTCACCTCGGTCGCGCATTTCCTCCCTCCGGACAACTCAATCCTTCACCGTCGCCTCCACCGTCTCCGGCTCGGTCCACATTTTCAGCACCACT GAAGCTCAGGATCCCTCGCTAGCGTTTAAGTCGGTAGTTTCCGCGGAAGGGAAAGGTTTCCATGTTGGGAAGATTACGGGTGTGGATTTTATGGAAGAAC GGAGCGAGTGTGTGAGTGTTGGAGAAGATGGAAGAGTGAATTTGGTTAGTATTTTGGATGGGAGTTATAAAAAGATTTTCGACGGGAATGGATTGGTGTC GTACACGGCGGTGAAGTCGAGGTCACCAACGGAGTTTATTACCGGCGGGTGTGGGTTTGGGCTCCAGATGTGGGATATGCGGCAGCCTGGATCCTCTGCT GTTGCTCAGTTCAAAGGCAACTTGGACAAGGGGAGAAGTTTCGGGATCATACATTCTGTTGATGTGCATCCATCCAGAAAGCACATTTGTCTGGCCGGGG GTTCATCAGGAACCATGTTTGCATGGGACTTACGAGGACAGCAGCAACCCATCCTGCTCTCTGGATCTGACAATGATACTGCAATCCCCTTTTTATCCGA GAGTGAGGTTTGGGAGGTTCAATATGACTCTTACATCAAGTCCTCAACCACTAATTTCTCATCCTCGAACATCTTGCCAGCCATGTTCTGCTCAGAAGAC GGCATCCTTGCAGTCCTTGAACAAGGTGAAGAACCTGCAGAGCTTCTTGCAGAACCTTGTGCTATCAATAGCTTTGACATTGATCGGCAGAACCCTTCGG AGGTGATTTGTAGTTTGGAATGGGAATCCATAGCCATAGTATCACGGCATTGA
AA sequence Show only first row Show all	>Lus10007707 pacid=23153296 polypeptide=Lus10007707 locus=Lus10007707.g ID=Lus10007707.BGIv1.0 annot-version=v1.0 MAVNGVPQTQIYRLPQSRYIDGVRWLPSIYPLHQSSIIAFFDTDEDSPSLEVHSLDNESSKSLSLVSSWSPRSRISSLRTTQSFTVASTVSGSVHIFSTT EAQDPSLAFKSVVSAEGKGFHVGKITGVDFMEERSECVSVGEDGRVNLVSILDGSYKKIFDGNGLVSYTAVKSRSPTEFITGGCGFGLQMWDMRQPGSSA VAQFKGNLDKGRSFGIIHSVDVHPSRKHICLAGGSSGTMFAWDLRGQQQPILLSGSDNDTAIPFLSESEVWEVQYDSYIKSSTTNFSSSNILPAMFCSED GILAVLEQGEEPAELLAEPCAINSFDIDRQNPSEVICSLEWESIAIVSRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30840			Transducin/WD40 repeat-like su...		Lus10007707 [exp]	0	1
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	3.6	0.9164
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	4.0	0.8915
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10012920 [exp]	4.9	0.8985
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	6.0	0.9107
AT5G48760			Ribosomal protein L13 family p...		Lus10016679 [exp]	6.7	0.9115
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10032163 [exp]	7.7	0.9117
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10020149 [exp]	8.8	0.8962
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	11.2	0.8986
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	13.8	0.8689
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10032704 [exp]	14.7	0.8696

Compare expression of checked genes

Lus10007707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.