Plant FIBer expression Database

Lus10007708 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020128
[exp]
66 / 1e-12 ND 48 / 6e-07
Lus10032771
[exp]
64 / 2e-12 ND /
Lus10024981
[exp]
57 / 8e-11 ND /
Lus10023405
[exp]
53 / 2e-09 ND /
Lus10021245
[exp]
56 / 5e-09 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3)
Lus10003597
[exp]
55 / 5e-09 ND /
Lus10009245
[exp]
48 / 1e-07 ND 35 / 0.004
Lus10017916
[exp]
48 / 2e-07 ND /
Lus10025324
[exp]
48 / 2e-06 AT3G53720 432 / 3e-143 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10536 PMD Plant mobile domain
Representative CDS sequence
>Lus10007708 pacid=23153292 polypeptide=Lus10007708 locus=Lus10007708.g ID=Lus10007708.BGIv1.0 annot-version=v1.0
ATGACGTTCTGCTTAGCCGCTGGCGGTGCAAAGGTCCTTCCTAGAGATAAGTGGATTGATGTGCACTGGAGGGAAAGAATCGCGGAAGAACCCGACAAAT
TGAGGTTGGCTAACGCCGCCTTGATCGGCATCGCCGTTAGGGTTGGCCTCCGTCATCTTTGGAGCTGGCGTAGTTTTCAATGGATCCCGTGTGTCAACCC
CAACCTGATCGATGGAGAATTACTTTGGGGTGACCGCAACCAACATCGTATTGGGGATATATTCGAGAATGTGGAACCTAGTGTTACCCTTCAGTGTCGT
AGGACGTCTCATATTCTCGCATACCATAGTAACTTCGGCACTTTCTTGGAGGCCGTCGGACTTTTACTGATTGTTGGCCTCGCAACCCTTGCGCCCGATC
CACATCTTATCACGGCGTTGGTGGAGAGGTGGAGAGGTGGAGAGGTGGAGAGGTGGAGGCTGGAGACAAACACTTTCAACATGTACCATGGGGAGTGCTC
GTCATTTCTAGAGGATGTGGTGATACTAGTGTGTCTGCCGTTCAACATTCAGGTCCCCTACCACCGGCGTGAGTATTCGGTGATGTCCGATGACGCACAC
CTGGTTGTTGTGCCACTGAATTCTACCCGCAACATAATGTGTCATTGA
AA sequence
>Lus10007708 pacid=23153292 polypeptide=Lus10007708 locus=Lus10007708.g ID=Lus10007708.BGIv1.0 annot-version=v1.0
MTFCLAAGGAKVLPRDKWIDVHWRERIAEEPDKLRLANAALIGIAVRVGLRHLWSWRSFQWIPCVNPNLIDGELLWGDRNQHRIGDIFENVEPSVTLQCR
RTSHILAYHSNFGTFLEAVGLLLIVGLATLAPDPHLITALVERWRGGEVERWRLETNTFNMYHGECSSFLEDVVILVCLPFNIQVPYHRREYSVMSDDAH
LVVVPLNSTRNIMCH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G48120 hydrolases;protein serine/thre... Lus10007708
[exp]
0 1
Lus10010778
[exp]
1.7 1.0000
Lus10008049
[exp]
4.8 1.0000
AT1G48120 hydrolases;protein serine/thre... Lus10008569
[exp]
7.9 1.0000
AT3G25050 XTH3 xyloglucan endotransglucosylas... Lus10011845
[exp]
8.0 1.0000
Lus10022145
[exp]
8.7 1.0000
AT1G26420 FAD-binding Berberine family p... Lus10023368
[exp]
11.0 1.0000
AT1G26480 GF14IOTA, GRF12 general regulatory factor 12 (... Lus10026660
[exp]
13.3 1.0000
AT3G16180 Major facilitator superfamily ... Lus10034936
[exp]
13.9 1.0000
Lus10024550
[exp]
14.5 1.0000
Lus10034512
[exp]
14.8 1.0000

Lus10007708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.