Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035823 [exp] 54 / 5e-09 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Lus10036605 [exp] 39 / 0.0006 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102400 [exp] 40 / 0.0003 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007709 pacid=23153285 polypeptide=Lus10007709 locus=Lus10007709.g ID=Lus10007709.BGIv1.0 annot-version=v1.0 ATGTCGGCGACAGTGGCGGTGGCGGAGGAGGAGGATGATGCCGGAGTAATGACCTCCTCTTGCTGTGGCAGCGATCGGAAGAAGAAGGTCAAATCGAAAA CGAGGCTGGTGAAATACAACGACCTGCCGGATTATTTGAAGGACAACGAGCGAGTTTATCTTGGACCATTACCGGTCGGAATGGCCGCTGCGGGATGCGC TGTGGAGCGTTTTCTCCTGGCACAACGAAACCATCAACATATAGACGTAAAGGCCCGATTGAAAGAAATGTCAGCTCGGATTTTGAATTTCTTCGATTGG CATTTAGTCGGATTCTTAATCTTCGCCGGACTCGCCGTGGTGAGTTTCTTGGGTAAAATAGACGAGCTCGGAGGATTTCTCACGAGCTTCTCGAGGTACG ATCGGTGGATATTCAACTTTTCTTCCATCGGAGATGGATTTTCCGATTGA
AA sequence Show only first row Show all	>Lus10007709 pacid=23153285 polypeptide=Lus10007709 locus=Lus10007709.g ID=Lus10007709.BGIv1.0 annot-version=v1.0 MSATVAVAEEEDDAGVMTSSCCGSDRKKKVKSKTRLVKYNDLPDYLKDNERVYLGPLPVGMAAAGCAVERFLLAQRNHQHIDVKARLKEMSARILNFFDW HLVGFLIFAGLAVVSFLGKIDELGGFLTSFSRYDRWIFNFSSIGDGFSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007709 [exp]	0	1
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10003615 [exp]	15.3	0.6849
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	21.4	0.6755
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	30.8	0.6176
AT4G37280			MRG family protein (.1)		Lus10019311 [exp]	33.7	0.5937
AT5G23750			Remorin family protein (.1.2)		Lus10008014 [exp]	55.3	0.5687
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	57.4	0.5617
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10005539 [exp]	61.2	0.5642
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	61.8	0.5470
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10015974 [exp]	90.1	0.5426
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	96.7	0.5192

Compare expression of checked genes

Lus10007709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.