Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08040 575 / 0 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT3G49700 573 / 0 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT4G37770 571 / 0 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT5G65800 561 / 0 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT2G22810 551 / 0 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT4G26200 461 / 1e-160 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT3G61510 451 / 3e-156 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT1G01480 442 / 1e-152 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G11280 442 / 2e-152 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT5G51690 357 / 3e-119 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010243 [exp] 612 / 0 AT4G37770 570 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10011565 [exp] 586 / 0 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007223 [exp] 566 / 0 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10039647 [exp] 561 / 0 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10032695 [exp] 490 / 3e-172 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 486 / 1e-170 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10017521 [exp] 476 / 7e-166 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10036396 [exp] 456 / 9e-158 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10007910 [exp] 456 / 1e-157 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113900 [exp] 614 / 0 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 575 / 0 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.014G012600 [exp] 573 / 0 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.018G067000 [exp] 485 / 3e-170 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.006G149600 [exp] 485 / 3e-170 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.003G132300 [exp] 467 / 1e-162 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.001G099400 [exp] 461 / 3e-160 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 452 / 1e-156 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.015G132100 [exp] 359 / 1e-119 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 350 / 6e-116 AT1G62960 664 / 0.0 ACC synthase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10007714 pacid=23149227 polypeptide=Lus10007714 locus=Lus10007714.g ID=Lus10007714.BGIv1.0 annot-version=v1.0 ATGCAGCTGTCGAGGAAAGCAAGGTGTGAGACGCACGGTCAGGATTCATCCTACTTCATTGGTTGGCAAGAGTACGAGAGGAATCCTTACCATCCGTTAC ACAACCCTTGTGGCATCATTCAGCTCGGCCTCGCCGAAAATCAGCTGTCGTTTGACCTATTGGAGTCGTGGATATCCAACAATCCGCAAGTATTGGCGCT ACAGACAAACAATGGCGACTCCATATTCAAACACTTGGCTCTCTTTCAAGACTATCATGGCCTTCCCTCTTTCAAAACCACATTATCAAATTTCATGTCG GAGATAAGAGGAAACAAAGTGACATTTGATCCGGACACCCCCCCCCCCCCCGCCGGTGCAACTTCTGCTAATGAAACCCTCATTTTCTGCCTCGCCAATC CTGGAGACGCTTTTCTTCTCCCCACCCCATACTACCCTGGGTTCGATAGAGACCTGAAGTGGAGAACTGAAGTGGAAATCGTGCCAATACACTGCTCAAG TTCCAACAACTTCGAAATCACGATGCCATCACTAGTCAAAGCCTACGACCATGCGACAAAGCTACTAGGCCTCAATGTGAAAGGAATCCTAATCACCAAC CCATCAAACCCGCTAGGCACCACGTCATCGCTCGACCAGCTCAACCTCCTCATCGACTTCGCCCTCGCCAAGGGCATCCACATCGTCAGCGACGAAATCT ACTCCGGTACCGTCTTCGACGAACCTAGGTTCACCAGCATCGCAGAAGCTTGGAACGCAAGAAACACCAACACGATGACTTGTCCCATCCACATAGTGTC CAGCCTGTCCAAGGACCTGGGAGTCCCCGGGTTCAGAGTCGGGATGATCTACTCGGAGGACGAAACAGTTGTGTCCGCAGCCACCAAGATGTCGAGCTTC GGGCTGGTCTCGTCGCAGACTCAACACTTGCTGTCGGAGATGCTGTCGGACAGGAGGATGACGGCGGAGTACATGGAGGTGAACAAAAGGCGGCTGAGGA GGAGACAACAAGCGATGGTTTCGGGGCTTCGAGAGTCCGGGATAGGGTGCCTCCAGGGTAGCAATGCGGGGTTGTTTTGCTGGGTGGACATGAGGCATTT GTTGAAAGGTGATGAGAAGAGTTTTGAAGCGGAGAAAGAGCTGTGGAAGGAGATGCTGTTTGAGGTTGGTGTTAATATATCGCCCGGTTCGTCTTGCCAT TGTTCGGAGCCTGGGTGGTTCCGGTTCTGCTTCGCCAATTTGTCCGAAGAGACGTTGGATGTCGCCATGAAGCGGATCAAGGACTTCGTTAGAGGACGGC GTACTGATTTTAAACGCGAAGCGATGTGA
AA sequence Show only first row Show all	>Lus10007714 pacid=23149227 polypeptide=Lus10007714 locus=Lus10007714.g ID=Lus10007714.BGIv1.0 annot-version=v1.0 MQLSRKARCETHGQDSSYFIGWQEYERNPYHPLHNPCGIIQLGLAENQLSFDLLESWISNNPQVLALQTNNGDSIFKHLALFQDYHGLPSFKTTLSNFMS EIRGNKVTFDPDTPPPPAGATSANETLIFCLANPGDAFLLPTPYYPGFDRDLKWRTEVEIVPIHCSSSNNFEITMPSLVKAYDHATKLLGLNVKGILITN PSNPLGTTSSLDQLNLLIDFALAKGIHIVSDEIYSGTVFDEPRFTSIAEAWNARNTNTMTCPIHIVSSLSKDLGVPGFRVGMIYSEDETVVSAATKMSSF GLVSSQTQHLLSEMLSDRRMTAEYMEVNKRRLRRRQQAMVSGLRESGIGCLQGSNAGLFCWVDMRHLLKGDEKSFEAEKELWKEMLFEVGVNISPGSSCH CSEPGWFRFCFANLSEETLDVAMKRIKDFVRGRRTDFKREAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007714 [exp]	0	1
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10041614 [exp]	1.0	0.8506
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10027062 [exp]	2.0	0.8450
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028857 [exp]	6.0	0.8225
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	6.3	0.8125
AT1G04910			O-fucosyltransferase family pr...		Lus10030093 [exp]	10.1	0.8257
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	11.8	0.7764
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	12.8	0.7596
					Lus10010697 [exp]	19.8	0.7442
					Lus10008327 [exp]	20.3	0.7442
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	20.9	0.7442

Compare expression of checked genes

Lus10007714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.