Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07960 938 / 0 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) AT4G31590 785 / 0 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) AT2G24630 764 / 0 ATCSLC8, ATCSLC08 CELLULOSE-SYNTHASE LIKE C8, Glycosyl transferase family 2 protein (.1) AT3G28180 745 / 0 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) AT3G07330 739 / 0 ATCSLC6, ATCSLC06 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) AT5G03760 394 / 3e-130 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 392 / 2e-129 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT5G22740 390 / 5e-129 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT2G35650 386 / 5e-127 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1) AT1G24070 381 / 4e-125 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018651 [exp] 1137 / 0 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10026923 [exp] 766 / 0 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10039440 [exp] 755 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10039475 [exp] 754 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10025886 [exp] 742 / 0 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10020120 [exp] 725 / 0 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10038217 [exp] 667 / 0 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10008646 [exp] 392 / 1e-129 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 388 / 8e-128 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114200 [exp] 1057 / 0 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.005G146900 [exp] 1049 / 0 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.018G009300 [exp] 776 / 0 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 770 / 0 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.002G248400 [exp] 733 / 0 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.014G190900 [exp] 708 / 0 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.010G234100 [exp] 410 / 1e-136 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G026400 [exp] 401 / 4e-133 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G190701 [exp] 387 / 9e-132 AT3G07330 429 / 5e-148 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.006G116900 [exp] 394 / 1e-130 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10007715 pacid=23149236 polypeptide=Lus10007715 locus=Lus10007715.g ID=Lus10007715.BGIv1.0 annot-version=v1.0 ATGGGTCCTCCTCCTCAAGTCCTCCTCCCCAAAGCCCACAAAGCCGCCGGGTGTTTAACCTCCATAGGCTCCACAATGGTCTCCCTGGGCTCCGCCATCA GACGCCGGGTCAGGTCGGGCCGCACCGACAACGACGCTGACGTCGGAGTTAGCGAGAACCCGACCGTCAGAACCCGGTTCCATTCTTGCATCAGGGTCTT CCTTTGGCTGTCGGTGCTGCTTCTAGGGTTCGAATTCGTGGCTTATTTCAAAGGCTGGCATTTCGAAGCCCCCCATCTGGAATTGCAGCATCTCCTCGCT ACCCCTCTCGGGTTTAAGGATTTCTTCGACTCAATTTACTCCCGCTGGGTTCTCTTCCGGGTGGAGTACCTTGCTCCGCCGCTCCAGTTCCTTGCAAATG CTTGCATCGTGCTTTTCCTTATTCAGAGCATAGACAGGCTCGTCCTCTGTCTGGGTTGTTTCTGGATCCGGCTTAAGAAGATCAAACCCGTCCCCAAACC GGCCGCCACCGACATGGAAACCGGCGAGAAGGGCTACTTCCCAATGGTGCTTGTTCAGATCCCCATGTGTAACGAGAAAGAGGTTTATCAGCAATCAATT GGAGCCGTGTGCAATCTGGATTGGCCGAAGTCCAAGATTCTGATCCAAGTTCTCGATGATTCTGATGATCCCACAACCCAGCTCTTAATTAATGAAGAAG TCCAGAAATGGCAGCAACAGGGCGCCAACATTTTGTACAGACACCGTGTGATTAGAGATGGATACAAAGCTGGAAACCTCAAATCCGCCATGAACTGCAG CTACGTCAAAGACTATGAATTTGTTGCCATTTTCGACGCTGACTTCCAGCCCACCCCGGATTTTCTCCAGAGAACAGTCCCCCATTTCAAGGACAATGAG GAATTGGCGCTTGTTCAAGCTAGGTGGTCGTTTGTTAATAAGGATGAGAACCTACTCACTAGATTGCAGAACATTAACTTAGCTTTCCATTTCGAAGTAG AGCAGCAAGTAAACGGCGTGTTTCTTAACTTCTTTGGGTTCAATGGGACTGCTGGTGTTTGGAGGATTAAGGCTTTGGAGGAATCTGGTGGTTGGTTAGA GAGGACTACTGTTGAGGACATGGATATAGCTGTTCGTGCTCATCTCCATGGCTGGAAGTTTGTTTTCCTCAATGATGTCGAGTGCCAGTGTGAATTGCCT GAATCATACGAGGCTTACAGAAAGCAACAACACAGATGGCATTCTGGTCCTATGCAGCTGTTTAGACTCTGTCTGCCTGCTATTGTTCGATCAAAGATTA GCGTATGGAAGAAGTGCAATTTGATATTTCTTTTCTTCCTGCTGAGGAAGTTGATCCTGCCATTTTACTCCTTCACACTCTTCTGTATTATTCTGCCGAT GACGATGTTTATACCAGAGGCCACTCTTCCAGCATGGGTTGTATGCTATATCCCGGCCACCATGTCATTCTTAAACATCCTCCCAGCACCGAAAGCCTTC CCCTTCATTGTTCCTTACCTCTTATTCGAGAACACCATGTCGGTAACCAAGTTCAATGCAATGATCTCTGGACTGTTTCAGCTGGGAAGTGCCTATGAGT GGGTTGTCACAAAGAAGTCGGGACGATCATCAGAAGGCGACCTCGTGGCGCTGGCTCAGAAAGAGACTAAACATCAAAGGGGTTCGTCCGAGCCTAACCT GGCAGAGATGAAGGAAGCGATTGTGAAGCAAGAGCAGAAAGAGCTGAAGAAGAAGAAACACAACAGGATATACACAAAGGAGTTGTCTTTAGCTTTCCTT CTCTTAACAGCTGCAGCAAGGAGCCTGCTCTCAGCTCAGGGTATTCATTTCTACTTCTTGCTGTTCCAGGGAGTATCATTCCTACTGGTGGGTCTGGACT TGATAGGAGAGCAGGTTCAGTGA
AA sequence Show only first row Show all	>Lus10007715 pacid=23149236 polypeptide=Lus10007715 locus=Lus10007715.g ID=Lus10007715.BGIv1.0 annot-version=v1.0 MGPPPQVLLPKAHKAAGCLTSIGSTMVSLGSAIRRRVRSGRTDNDADVGVSENPTVRTRFHSCIRVFLWLSVLLLGFEFVAYFKGWHFEAPHLELQHLLA TPLGFKDFFDSIYSRWVLFRVEYLAPPLQFLANACIVLFLIQSIDRLVLCLGCFWIRLKKIKPVPKPAATDMETGEKGYFPMVLVQIPMCNEKEVYQQSI GAVCNLDWPKSKILIQVLDDSDDPTTQLLINEEVQKWQQQGANILYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLQRTVPHFKDNE ELALVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFVFLNDVECQCELP ESYEAYRKQQHRWHSGPMQLFRLCLPAIVRSKISVWKKCNLIFLFFLLRKLILPFYSFTLFCIILPMTMFIPEATLPAWVVCYIPATMSFLNILPAPKAF PFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVALAQKETKHQRGSSEPNLAEMKEAIVKQEQKELKKKKHNRIYTKELSLAFL LLTAAARSLLSAQGIHFYFLLFQGVSFLLVGLDLIGEQVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	0	1
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	3.2	0.8510
AT3G57400			unknown protein		Lus10042067 [exp]	4.2	0.8159
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	4.9	0.8009
AT5G65650			Protein of unknown function (D...		Lus10014322 [exp]	6.5	0.8188
					Lus10006920 [exp]	9.5	0.7661
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	11.6	0.7767
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10027637 [exp]	12.0	0.7567
AT4G35320			unknown protein		Lus10022985 [exp]	13.6	0.7777
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10020030 [exp]	14.5	0.7656
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	15.2	0.7799

Compare expression of checked genes

Lus10007715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.