Plant FIBer expression Database

Lus10007717 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12210 267 / 1e-91 DNA binding (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018653
[exp]
314 / 4e-108 AT3G12210 219 / 8e-71 DNA binding (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G114400
[exp]
315 / 1e-110 AT3G12210 268 / 1e-91 DNA binding (.1.2)
PFAM info
Representative CDS sequence
>Lus10007717 pacid=23149255 polypeptide=Lus10007717 locus=Lus10007717.g ID=Lus10007717.BGIv1.0 annot-version=v1.0
ATGGTGGATTTCCAGAGCTCCGACATCAGTCTCTGGAAAGATGCGCTCCAAAGTTATCCCTCTCGGATAGCGTCTCTTGACAAACCCGACCTCGTTTCCC
TCGACGAGTTCTACCGCGTTGAACTTCCTTCCGCCATTACCCTGCGGAACCCTAACCCTCACATCACCACTCCCGAACTTTCCAAGCTGATGCAGTGGAA
GCTATCCCGAGGAAAATGGCGGCCGCGATTACTGGATTTCGTATCTTCTCTAGATGAGGAGCTTGTGAAATCGGCTTCCGGGAAGGCATTCCAGTCCCTC
CCTGACTTATCGAAAGCGATCTCTGCTCTAACGGTTCTGAAAGGCGTTGGTCCGGCCACTGCTTCTGCCGTTCTTGCTGCTTACTCGCCTGATGTCGCCC
CCTTCATGTCAGACGAAGCTATGGAAGCAGCTCTTGGAAACTCCAAAGAGTACACGCTAAAAAGGTATCTGGCGTTCGCTGAAAAACTGCAGGAGAAAGC
CAAGGAGTTAAGTACAGGTGATGATTTGTTCACACCTTCAGATGTGGAAAGGGCCTTGTGGAGCTCTGTTATAAAGACCAAACTCGAATCACTTCCCCCG
GGAACCAAGACAAGCCAAGGCGCCAAGAGAAAGAGGAAACGTTGA
AA sequence
>Lus10007717 pacid=23149255 polypeptide=Lus10007717 locus=Lus10007717.g ID=Lus10007717.BGIv1.0 annot-version=v1.0
MVDFQSSDISLWKDALQSYPSRIASLDKPDLVSLDEFYRVELPSAITLRNPNPHITTPELSKLMQWKLSRGKWRPRLLDFVSSLDEELVKSASGKAFQSL
PDLSKAISALTVLKGVGPATASAVLAAYSPDVAPFMSDEAMEAALGNSKEYTLKRYLAFAEKLQEKAKELSTGDDLFTPSDVERALWSSVIKTKLESLPP
GTKTSQGAKRKRKR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12210 DNA binding (.1.2) Lus10007717
[exp]
0 1
AT1G18650 PDCB3 plasmodesmata callose-binding ... Lus10021157
[exp]
3.3 0.9649
AT5G14920 Gibberellin-regulated family p... Lus10039443
[exp]
8.5 0.9483
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10041347
[exp]
9.5 0.9482
AT4G11080 3xHMG-box1 3xHigh Mobility Group-box1, HM... Lus10003904
[exp]
12.7 0.9402
AT5G48480 Lactoylglutathione lyase / gly... Lus10020399
[exp]
16.1 0.9450
AT1G50660 unknown protein Lus10032637
[exp]
16.3 0.8499
AT3G53730 Histone superfamily protein (.... Lus10038481
[exp]
16.4 0.9374
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10037371
[exp]
17.3 0.9477
AT3G13960 GRF ATGRF5 growth-regulating factor 5 (.1... Lus10009533
[exp]
18.7 0.9327
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10017292
[exp]
22.6 0.9402

Lus10007717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.