Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58440 797 / 0 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G37760 764 / 0 SQE3 squalene epoxidase 3 (.1) AT2G22830 726 / 0 SQE2 squalene epoxidase 2 (.1) AT5G24150 478 / 4e-165 SQP1, SQE5 SQUALENE MONOOXYGENASE 5, FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G24160 462 / 6e-159 SQE6 squalene monoxygenase 6 (.1) AT5G24140 436 / 1e-148 SQP2 squalene monooxygenase 2 (.1) AT5G24155 56 / 2e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018654 [exp] 985 / 0 AT1G58440 827 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10039649 [exp] 803 / 0 AT1G58440 791 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10011732 [exp] 798 / 0 AT1G58440 785 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146700 [exp] 847 / 0 AT1G58440 766 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.002G114500 [exp] 840 / 0 AT1G58440 761 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G007600 [exp] 810 / 0 AT4G37760 795 / 0.0 squalene epoxidase 3 (.1) Potri.015G120900 [exp] 771 / 0 AT1G58440 745 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014378 [exp] 619 / 0 AT1G58440 603 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014376 [exp] 611 / 0 AT1G58440 575 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G121136 [exp] 594 / 0 AT1G58440 564 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G120676 [exp] 166 / 7e-50 AT4G37760 170 / 5e-52 squalene epoxidase 3 (.1) Potri.015G121201 [exp] 132 / 2e-36 AT2G22830 132 / 4e-37 squalene epoxidase 2 (.1) Potri.012G121412 [exp] 52 / 3e-08 AT1G58440 42 / 1e-05 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF08491 [flax] [poplar] SE Squalene epoxidase
Representative CDS sequence Show only first row Show all	>Lus10007718 pacid=23149228 polypeptide=Lus10007718 locus=Lus10007718.g ID=Lus10007718.BGIv1.0 annot-version=v1.0 ATGGTGGAGTATGGAAGCCTGCTTGGCTGGATTCTGGCCTCTGTCCTTGGCCTGCTCGGTTGTTACGTTTTCGCCGCGAGGAGGAATGCAGAGAGTAGAC GCAGAAGTGCATTGTCGGAAGAGAGACGTGATTCTGTCCGCAATCTCACCACCACTAAAGGAGAACACAGATCTGGAAATGCTTACGACGCCGATGTTCT CATCGTCGGTGCTGGCGTTGCCGGCGCTGCTCTCGCCCACACTCTCGGCAAGGATGGGCATAAGGTGCATGTCATCGAAAGAGATTTGACCGAGCCGGAC AGAATTGTTGGTGAATTGCTTCAACCAGGAGGTTACCTAAAGTTGATAGAATTGGGTCTTCAAGATTGTGTGGAGGAAATTGATGCTCAACGGGTGTTCG GTTATGCCCTTTTTAAGGATGGGAAACGTACCCTACTTTCATATCCGTTGGAAAAATTTCATTCGGATGTAGCAGGAAGGAGCTTTCACAATGGGCGCTT CATACAGAGAATGCGGGAGAAAGCTGCATCACTTCCCAATGTCCGACTGGAGCAAGGAACTGTGACTTCCCTACTTGAGAAAGAAGGAACTATCAAAGGT GTGCAGTACAAGAACAAAGACGGAGAACTGCAGACAGCATATGCACCCTTAACTATTGTCTGCGATGGTTGTTTCTCAAACTTACGTCGCACACTCTGCA ACCCAAAGGTTGATGTTCCATCATGCTTCGTTGGTTTGGTCTTGGAAAACTGTGACCTTCCCTTTGCAAATCATGGACATGTTATACTGGGAGATCCTTC TCCGATTTTATTCTATCCCATCAGTAGTACGGAAGTTCGCTGTCTGGTTGATGTTCCTGGACAGAAGGTTCCTTCCATCTCGAATGGTGAAATGGCAACA TACTTGAAGACTGCTGTAGCGCCTCAGCTTCCACCAGAGTTATACGATTCATTTGTCGCAGCTGTTGAGAAAGGGAACATCAGAACAATGCCGAACCGAA GCATGCCAGCTGCCCCATATCCAACTCCTGGCGCCTTGTTAATGGGTGATGCATTCAACATGCGCCATCCTTTGACAGGAGGAGGAATGACTGTTGCGCT GTCTGACATTGTTGTGCTACGGAATCTTCTCAGGCCTTTGCACGACCTGCACGATGCTCCTACTCTCTGCAAATACCTGGAATCATTCTACACCTTGCGT AAGCCTGTTGCTTCAACAATAAACACGCTCGCGGGTGCATTGTACAAGGTGTTCTCATCGTCTCCCGACAAAGCGAGGCAAGAGATGCGGGAGGCTTGTT TCGATTATCTTAGCCTTGGAGGTGTGTGCTCGAGCGGGCCAGTTTCGTTGCTGTCAGGGCTAAACCCTCGGCCGTTAAGCTTGGTTCTCCATTTCTTTGC TGTCGCAGTGTATGGGGTAGGGCGACTCTTGATTCCTTTCCCTTCACCAAAACGCATCTGGATTGGAGCTAGGGTGATCTCGGGGGCATCAGGAATAATA TTCCCAATAATAAAAGCAGAAGGAGTAAGGCAGATGTTCTTCCCAGCAACTGTGCCTGCTTACTACAGAGCCCCTCGCGTTAACTGA
AA sequence Show only first row Show all	>Lus10007718 pacid=23149228 polypeptide=Lus10007718 locus=Lus10007718.g ID=Lus10007718.BGIv1.0 annot-version=v1.0 MVEYGSLLGWILASVLGLLGCYVFAARRNAESRRRSALSEERRDSVRNLTTTKGEHRSGNAYDADVLIVGAGVAGAALAHTLGKDGHKVHVIERDLTEPD RIVGELLQPGGYLKLIELGLQDCVEEIDAQRVFGYALFKDGKRTLLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEKEGTIKG VQYKNKDGELQTAYAPLTIVCDGCFSNLRRTLCNPKVDVPSCFVGLVLENCDLPFANHGHVILGDPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMAT YLKTAVAPQLPPELYDSFVAAVEKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLHDLHDAPTLCKYLESFYTLR KPVASTINTLAGALYKVFSSSPDKARQEMREACFDYLSLGGVCSSGPVSLLSGLNPRPLSLVLHFFAVAVYGVGRLLIPFPSPKRIWIGARVISGASGII FPIIKAEGVRQMFFPATVPAYYRAPRVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10007718 [exp]	0	1
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10018654 [exp]	1.0	0.9604
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10022198 [exp]	4.5	0.9384
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	6.3	0.9395
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	9.5	0.9388
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	13.0	0.9275
AT2G20820			unknown protein		Lus10031625 [exp]	13.7	0.9199
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	15.5	0.9306
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10027401 [exp]	15.5	0.9277
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	19.6	0.9274
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	22.0	0.9058

Compare expression of checked genes

Lus10007718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.