Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44920 248 / 2e-82 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018656 [exp] 442 / 1e-158 AT1G44920 291 / 3e-99 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114900 [exp] 264 / 1e-88 AT1G44920 232 / 2e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11255 [flax] [poplar] DUF3054 Protein of unknown function (DUF3054)
Representative CDS sequence Show only first row Show all	>Lus10007720 pacid=23149259 polypeptide=Lus10007720 locus=Lus10007720.g ID=Lus10007720.BGIv1.0 annot-version=v1.0 ATGGTGGTAAGCCAAGCTCCTGGAGGAGCACCACTCTCCGGCAGAAGAAGAAGTGCCACCGCCTCCATCCAATTCACCCTTCCCAAACCTCCTTTGTTTC CCCAACTAGCCCAGCCAACCAGAAACCATAGGAGACGCCGCCTTTGTCTCACTTTCTGTAAGGCTGACGGCGGAGGAGGAAGATTGGACGCCCCAACTTC CTCCTCCTCAATCAGGCAATCGGAGACTTCGGAACCGCAGCCAACAGCCCGTCCATCTCTTCCGAATTTAGATACGGTTTTCGTGGGTCAGAAGAATGTT CCTCTTGAAGGTGTCATTCAGTTTGACAAACCCAGCTCCTCGTCTTCTTCTTCGCGACTTGATAAATGGGGTCGGGTCGCCCTGTTGGCTGGAGGGGACG TACTGTCGTTGCTCATATTCTCAGCAATTGGGAGACTCAGCCATGGCTTTCCTGTACTTGACGTGGATACATTACGCACAGCTGATCCTTTTATTGCAGG GTGGTTCCTGGGTGCTTACTTTCTTGGGGGCTATGGTGAAGATGGGCGTGGAATGAACGGTACGTCCAAGGCTGTTGTTGCAGCTGCCAAATCTTGGGCT GTTGGAATTCCCCTGGGGATAGTCATAAGGGCAGCAACATCGGGGCATGTTCCAGCATCTACCTTTGTATTAGTGACAATGGGAAGCACAGGCGTTTTGC TGACGGGGTGGAGAGCACTAGTATCCAGCATTCTTCCTAAGAAGGAGGATAAGAAGGACGACATGTACCGACGGGGAAATCCCTTCGAATTGTTTGAGGT ACTTCTTATTTTGTATTCTGATGATTTGATTTTGCTGGGCTAA
AA sequence Show only first row Show all	>Lus10007720 pacid=23149259 polypeptide=Lus10007720 locus=Lus10007720.g ID=Lus10007720.BGIv1.0 annot-version=v1.0 MVVSQAPGGAPLSGRRRSATASIQFTLPKPPLFPQLAQPTRNHRRRRLCLTFCKADGGGGRLDAPTSSSSIRQSETSEPQPTARPSLPNLDTVFVGQKNV PLEGVIQFDKPSSSSSSSRLDKWGRVALLAGGDVLSLLIFSAIGRLSHGFPVLDVDTLRTADPFIAGWFLGAYFLGGYGEDGRGMNGTSKAVVAAAKSWA VGIPLGIVIRAATSGHVPASTFVLVTMGSTGVLLTGWRALVSSILPKKEDKKDDMYRRGNPFELFEVLLILYSDDLILLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44920			unknown protein		Lus10007720 [exp]	0	1
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10014858 [exp]	3.0	0.9254
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036600 [exp]	3.2	0.9239
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	3.6	0.9331
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10002349 [exp]	4.2	0.9234
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10005314 [exp]	5.3	0.9297
AT5G20935			unknown protein		Lus10013382 [exp]	7.3	0.9183
AT1G65230			Uncharacterized conserved prot...		Lus10020202 [exp]	7.7	0.9241
AT3G18870			Mitochondrial transcription te...		Lus10026325 [exp]	9.5	0.9204
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	13.6	0.9201
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	15.2	0.9145

Compare expression of checked genes

Lus10007720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.