Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58470 216 / 1e-65 XF41, ATRBP1 RNA-binding protein 1 (.1) AT4G26650 205 / 1e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 204 / 1e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 201 / 5e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 193 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 186 / 9e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G33410 184 / 3e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G40490 152 / 3e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 147 / 6e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 145 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018657 [exp] 516 / 0 AT1G58470 233 / 1e-73 RNA-binding protein 1 (.1) Lus10000537 [exp] 202 / 5e-59 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 200 / 1e-58 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 201 / 2e-58 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 200 / 5e-58 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 199 / 8e-58 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043124 [exp] 197 / 8e-58 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039054 [exp] 197 / 1e-57 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 199 / 2e-57 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G115000 [exp] 235 / 2e-73 AT1G58470 219 / 7e-69 RNA-binding protein 1 (.1) Potri.014G012700 [exp] 226 / 2e-67 AT1G58470 180 / 2e-51 RNA-binding protein 1 (.1) Potri.008G170400 [exp] 206 / 6e-61 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G222400 [exp] 206 / 8e-61 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 206 / 1e-60 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 200 / 1e-58 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G361300 [exp] 199 / 3e-58 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 199 / 5e-58 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G258600 [exp] 197 / 8e-58 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G010200 [exp] 198 / 2e-57 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10007721 pacid=23149269 polypeptide=Lus10007721 locus=Lus10007721.g ID=Lus10007721.BGIv1.0 annot-version=v1.0 ATGTTGGTGTCGATCTCCCAGCCTAGCAATCAATCGATCAATCAAACAATTTCGAAGCTAAAAGTCGTTACCTTCAATGAAACTATACAAGTGGTCGCGC AACCTCGGCGTTCTTCCCCTGCGCAATGCAACCTCGGCGTCCACCCGAAGATTTTGAGTTATTCGCCATTGTGGTACAGTTGGCAACCTCTCACTGTAGA GGGCAAAGTGGATACGCCGTATCGGTCAAGCGCAATCGCAGAGGCAGAGACGGAGGTTATTGAGAGGCACGGCAGAGCCGGCGGTGGAGAAGGTCTTACG TCCAAGCTCAAGACCGGGGGTGAGGCACGGGCGAAGCTTTTCGTCGGGGGAATAAGTCGGGAGACGAACGAGGAAGCTCTCAGGGTTCATTTCAGCAGGT ATGGAGAAGTTGCTGGTTCACTTGTTGCCAAGGACAGGACTACCAAGATTCCCAGAGGGTTTGGCTTCGTTTGGTTCTCTGACCCTTCATTTGCAGACAA GGCTCTCCGAGAAACTCATTTTATATCGGGTCGTACGGTAGAAGTCAAGAAAGCCATCCCGAGAAGTGAACAGTATCAGAACCACCAGCACCAGCAGCCA TTCATTGAACAAAAGCGCAGTGGATTCAGTATCGACAGTAGCAATGGGAGCAGTAGCATCATTCCTCTCAGGACTAAAAAGATATTTGTAGGGGGGTTAT CAGCTGGTTTAACTCAGGCTCAGTTTAAGCATTATTTCGAGAGGTTTGGTAAAATAGTGGATGTGGTCGTGATGCAAGACAGCTCGACAAGCCGACCAAG GGGATTCGGGTTCGTGACCTTTGATTCCGAAGATTCCGTTGAGAAGGTTATGCTCAATCCTTTCCATGAGTTGAATGGCAGGCAGGTGGAGGTCAAGAGA GCTGTGCCGAAGGATGAAGTGAACTTGAGCAAGAACAATAATGACAGCTTATCAGCAAGTTACAACACTAATTGGTCTTCTACTAGTATTATTGAGCCTC CGAGGGTCCAACCATATTCATACGGTTCTGGTTATCAACTCTACCCGCCTTATGCTCCCATGTATATCGGTGGTGGGTATCCTCCTTATGGAACTGGATT GTATAGCAGTGTGTATCCAGTGGTTGGATATGGTAGAGCTGGCGTTGGCACTACTACAGTTGTGACTGGGAACCATTGGAGTGGTCCAGTCATGGTTGGA GGCACAGGCGCAGGCTTGGCTCCTATTCCTTATGGTGACGGTTATCTCTATCCTTACCCGAGTGGTGGGTATGGTGATGTGAGGAGCATGGTAAACAACT ATACTGGATTTGTCGGGACTGGAATTGATGAAAAACTAAATGTGGTTTTCGGCGCAAGTGTATGTTCTCCATCCAATATTCTACCGCGTCAGGTTGAAGG ACTAAATCTGCAAGTCCGCGCTTTAAGTATGAGGGATGGTCCGGGCAGCGCTTCTTCGAGCTAA
AA sequence Show only first row Show all	>Lus10007721 pacid=23149269 polypeptide=Lus10007721 locus=Lus10007721.g ID=Lus10007721.BGIv1.0 annot-version=v1.0 MLVSISQPSNQSINQTISKLKVVTFNETIQVVAQPRRSSPAQCNLGVHPKILSYSPLWYSWQPLTVEGKVDTPYRSSAIAEAETEVIERHGRAGGGEGLT SKLKTGGEARAKLFVGGISRETNEEALRVHFSRYGEVAGSLVAKDRTTKIPRGFGFVWFSDPSFADKALRETHFISGRTVEVKKAIPRSEQYQNHQHQQP FIEQKRSGFSIDSSNGSSSIIPLRTKKIFVGGLSAGLTQAQFKHYFERFGKIVDVVVMQDSSTSRPRGFGFVTFDSEDSVEKVMLNPFHELNGRQVEVKR AVPKDEVNLSKNNNDSLSASYNTNWSSTSIIEPPRVQPYSYGSGYQLYPPYAPMYIGGGYPPYGTGLYSSVYPVVGYGRAGVGTTTVVTGNHWSGPVMVG GTGAGLAPIPYGDGYLYPYPSGGYGDVRSMVNNYTGFVGTGIDEKLNVVFGASVCSPSNILPRQVEGLNLQVRALSMRDGPGSASSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10007721 [exp]	0	1
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10030108 [exp]	2.0	0.9171
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10018657 [exp]	3.5	0.9100
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	8.8	0.8792
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10008003 [exp]	11.0	0.8525
AT1G51060		HTA10	histone H2A 10 (.1)		Lus10032464 [exp]	14.3	0.8817
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10011833 [exp]	15.9	0.7994
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	16.2	0.8493
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	16.4	0.8506
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	20.2	0.8840
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	20.6	0.8204

Compare expression of checked genes

Lus10007721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.