Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44910 664 / 0 ATPRP40A pre-mRNA-processing protein 40A (.1.2) AT3G19670 440 / 5e-138 ATPRP40B pre-mRNA-processing protein 40B (.1) AT3G19840 72 / 1e-12 ATPRP40C pre-mRNA-processing protein 40C (.1) AT4G16280 47 / 9e-05 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 44 / 0.0008 flowering time control protein-related / FCA gamma-related (.1) AT2G41020 43 / 0.001 WW domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018659 [exp] 1326 / 0 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10006142 [exp] 551 / 3e-180 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1) Lus10033770 [exp] 408 / 3e-126 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10030562 [exp] 102 / 1e-21 AT3G19840 671 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10012908 [exp] 97 / 2e-20 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10017070 [exp] 49 / 2e-05 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 49 / 2e-05 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006305 [exp] 46 / 3e-05 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4) Lus10029574 [exp] 46 / 0.0002 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G013100 [exp] 830 / 0 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.009G085400 [exp] 625 / 0 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.001G289800 [exp] 613 / 0 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.010G170400 [exp] 103 / 4e-22 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1) Potri.010G147900 [exp] 50 / 7e-06 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 48 / 4e-05 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0584 [flax] [poplar] FF PF01846 [flax] [poplar] FF FF domain
Representative CDS sequence Show only first row Show all	>Lus10007723 pacid=23149229 polypeptide=Lus10007723 locus=Lus10007723.g ID=Lus10007723.BGIv1.0 annot-version=v1.0 ATGGCTCCTACACAGCAAGGGCAGCCATTTATGCATGTAGCTTCCCAACAGTTTCGACCTGTTGGACAGGGCATTCCCTCTTCTAATGTCTCGATGCATC CGAGTCAGCAGCATCAGTATTCTCAGCCTTTGCATCAGTTGCCTCCATGGTCTGGTCAACAAGGGCATTTGCAACCTTCATCACAGGCTGTACCGATGCA GTATGTCCAACCAAATAGGCATCTTACAGCTAGCTCTACACAGCCACAGCAAAATGCTCATACGCCTGCAGTGGGTGTCTCAGGGGTTCCTTTCTCTTCA ACATATAATTTTGTGCCATCATTTGGGCAGCCACAAAATATGCACGGATCATCCCAATTTCAGCCCGCTCCTCAGGTCCACACATCTGTAGCACCTCCTG TAGGTCAGCCTTGGCTGCCCCCTCCAAGTAATGGGGCACCACCTGTTATGCAAGTGCAGCCAAATGGGCAACAACCTCATGTATCTTCTTCTGACCCTGC AACAGATGCTCCTAGCAGTGGTCCGCAATCTTCACAGGATTGGCAAGAGCATACAGCTCCTGATGGAAGGAGATATTATTACAACAAGAGAACACGACAA TCTAGTTGGGAGAAGCCATTTGATCTTATGACACCGATTGAGAGGGCTGATGCTTCAACCGTGTGGAAGGAATTCACAACACCAGAGGGTAAAACATATT ACTATAACAAGGTTACAAAACAGTCGAAGTGGTCAATACCTGAGGAATTGAAGTTGGCTCGTGATCAAGCTCAGAACGCTGCTGCCCAGGGAACTCAGAT TGTAACAGATGTGGCTGCTCAGGGATTGTCTGCTGCTTTAGGAACTACAAGTGGAACAGCTGCTGCAGCTATTTCGATTACCTCTCCTCCCTCGGTGCCT AATGAAGTTGGTGCAAGTCCAGTGCCACTCTCACTTGCTGGAGTTCCCCAGTCTTCTGGATCATCTGCTATTGTTGCTCCGTCTATTGTGACGAGTAGTG GTGTCCCAAGTTCTGTAGTTGTCATGGCTTCTTTACCTGCTGATACTTCAGGAAGTACTGGTGTTCTTGCTGCTGCTTTAAATGAAAAGGCATCACCATT GGGTAACTTCGATAATGTATCATCCCAAGGCATTCCAGAATCCCAAGATGGATCTTCACATGACAATGAGGAAGCACCAAAGGGAATGATAGCTGCCGGG AAAAATATAGAGTCCCCTTCGAAGGAGAAAACTCTAGATGATGAACCACTAGTTTTTGTCAATAAGCAAGAGGCAAAAAGTGCATTCAAGGCCTTACTAG AGTCAGCGAATGTCAAGTCTGATTCAACATGGGAGCAGGCGATGAGAGAAATTGTTAATGACAAGCGATATGGTGCCCTAAAGACACTTGGAGAGCGGAA ACAGGCATTTAATGAGTACTTGGGTCAAAGGAAAAAAATAGAAGCTGAGGAGAGACGCATAAGGCAAAAAAAAGCTCGTGAGGAATTTACAAAGATGCTT GAAGAGTCCACAGAGCTTACATCGTCTATGAAGTGGAGCAAGGCACTAAGCTTATTTGAGAATGATGAACGGTTTAAGGCTGTTGAGAAATCCAGGGATC GGGAGGATCTTTTTGACAATTACGTTGTAGAACTTGAAAGGAAGGAAAGAGAGAAGGCTGCAGAGGAGCATAGGAGAAATGTGGCAGATTACAGGCAATT TTTGGAATCTTGTGACTTCATTAAGGTGAACAGCCAGTGGCGGAAGGTCCAAGATCGGTTGGAGGATGATGAGACATGCTTGCGTCTTGAGAAACTTGAA CGTCTGCTCATCTATCAGGATTACATTCGTGACTTGGAGAGAGAAGATGAGGAACAGAAGAAGGCATATAAGGAACAACAATGGCGAGCCGAGCGAAAGA ACCGCGATGCATTTCGGAAATTGATGGAGGAACATGTTGCTGCCGGTACTCTGACGGCCAGAACGCACTGGCTTGATTACTGTCTGAAGGTGGTGCATTG CATTTTGTGTTCAGCTGTAGAAGTTCTTGTCGTCATTAGCAGACGTCCTAAATATCTTAATGTTGATAGACACTTTACAAAGTTAAATATTCAAGTCAGC GAGAACCAACATGCTGACTGGGACCTGTTATGTAATAGTTGGCCCGCTGTTCTGTTGATTCAGGTTAAGGATCTTCCTGAATATCAAGATCTTGCAGAAA ATACTTCTGGGTCGACACCAAAAGAGTTATTTGAGGATGTTTATGAGGAATTAGAGAAACAGATAACTATGGTTTTGACATGGGCGTTTGAGGATTTCAA AGCTGCTCTATCTGGGAACGTTGATTCCCAGTTTATATCGGATATCAACTTGAAGCTTGTGTATGAGGATTTAGTTGAGAGAGCAAAGGAGAAAGAAGAG AAAGAAGCTAAAAAGCGCCAACGGCTTGCTGATGATTTTACAGAACTTCTGCATTCTTATAAAGAGATCACTGCATCATCGAACTGGGAAGAGTCAAAAC CACTGTTTGAAGACAGTCAGGAGTACAGGGCGATTGGCGAAGAGGATTACAGGAAAGAAATTTTCGAGGAATACGTTGCTCATTTACATGAAAAAGCTAA AGAAAAGGAACGTAAGCGTGAAGAAGAGAAGGCCAGAAAGGAGAAAGAAAGGGAGGAGAAAGAAAGGCGGAAAGAGAGAAAGGAGAAGGAGAAAGAACAG GAAAGAGAAAAGGACAAGGGAAAAGAACGTACAAGAAAAGATGAAACAGATAGTGAAACTATGGAAATGGAAGCAAGTGACGGTTATGGGCAAAAAGAGG AGAAGAAGAGGGATAAAGAGAGGAAACACAAGAAGAGAAATTATAGTAATGCTGAAGATGTAAGCTCGGATAAGGATGAAAAAGAGGAATCTAAAAAGTC ACGCAGACATGGGAGCGACCGTAAGAAGTCAAGAAAGCGCTCATACGCACCTGAGTCGGAAACTGAGAGCCGGCACAAGAAAAACAGGAAGGATCGTGAT GGTTCTCGTAGAAACGATGACCTAGAGGATGGAGAAGTCGGTGAGGATGGCGAAATCCGGTAG
AA sequence Show only first row Show all	>Lus10007723 pacid=23149229 polypeptide=Lus10007723 locus=Lus10007723.g ID=Lus10007723.BGIv1.0 annot-version=v1.0 MAPTQQGQPFMHVASQQFRPVGQGIPSSNVSMHPSQQHQYSQPLHQLPPWSGQQGHLQPSSQAVPMQYVQPNRHLTASSTQPQQNAHTPAVGVSGVPFSS TYNFVPSFGQPQNMHGSSQFQPAPQVHTSVAPPVGQPWLPPPSNGAPPVMQVQPNGQQPHVSSSDPATDAPSSGPQSSQDWQEHTAPDGRRYYYNKRTRQ SSWEKPFDLMTPIERADASTVWKEFTTPEGKTYYYNKVTKQSKWSIPEELKLARDQAQNAAAQGTQIVTDVAAQGLSAALGTTSGTAAAAISITSPPSVP NEVGASPVPLSLAGVPQSSGSSAIVAPSIVTSSGVPSSVVVMASLPADTSGSTGVLAAALNEKASPLGNFDNVSSQGIPESQDGSSHDNEEAPKGMIAAG KNIESPSKEKTLDDEPLVFVNKQEAKSAFKALLESANVKSDSTWEQAMREIVNDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRIRQKKAREEFTKML EESTELTSSMKWSKALSLFENDERFKAVEKSRDREDLFDNYVVELERKEREKAAEEHRRNVADYRQFLESCDFIKVNSQWRKVQDRLEDDETCLRLEKLE RLLIYQDYIRDLEREDEEQKKAYKEQQWRAERKNRDAFRKLMEEHVAAGTLTARTHWLDYCLKVVHCILCSAVEVLVVISRRPKYLNVDRHFTKLNIQVS ENQHADWDLLCNSWPAVLLIQVKDLPEYQDLAENTSGSTPKELFEDVYEELEKQITMVLTWAFEDFKAALSGNVDSQFISDINLKLVYEDLVERAKEKEE KEAKKRQRLADDFTELLHSYKEITASSNWEESKPLFEDSQEYRAIGEEDYRKEIFEEYVAHLHEKAKEKERKREEEKARKEKEREEKERRKERKEKEKEQ EREKDKGKERTRKDETDSETMEMEASDGYGQKEEKKRDKERKHKKRNYSNAEDVSSDKDEKEESKKSRRHGSDRKKSRKRSYAPESETESRHKKNRKDRD GSRRNDDLEDGEVGEDGEIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	0	1
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	1.7	0.8946
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	2.0	0.8882
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	5.2	0.8867
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	6.0	0.8615
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10013308 [exp]	6.9	0.8708
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	8.2	0.8482
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	9.9	0.8573
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	12.6	0.8607
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	14.0	0.8789
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	15.9	0.8435

Compare expression of checked genes

Lus10007723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.