Plant FIBer expression Database

Lus10007724 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018660
[exp]
479 / 1e-172 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G115600
[exp]
53 / 1e-07 ND /
Potri.014G013200
[exp]
47 / 8e-06 ND /
PFAM info
Representative CDS sequence
>Lus10007724 pacid=23149243 polypeptide=Lus10007724 locus=Lus10007724.g ID=Lus10007724.BGIv1.0 annot-version=v1.0
ATGGCTGCTGCTGCTTCACAGGTCAAACAACTTGGGGAGATTCTTAAAGAGCAACAGGAGCCTTTCATTCTGCAGACATACCTTATTGAAAAAGGCTGCT
TCAATGGGAAGCCAAACAAAGAACAAGTTAGCCTTGGCTGCTTCAATGGCAAGAAGCACAGCAGCAGGAAAAAGGGAATCCACAAGTTGGTCAGAATTCT
GATAGGTTCCATTAACAAGAGGGGAAAGAGTTCAGAAAAGACTCTGCAGGCAGAGAGGTTATCATCATTTGATAGCAGCTGCTCAACTGCTCTGGATTGG
GGTTCTGGAGATGAAGAAGAAAATAGAGAAATTTGCTCATCATCATCATCATCAGGGAATAAATGCAGTTACCTGGACCTGCAATTCTGCAATCCCAATG
ACCAAAAGCAGATTAATGGTGTAGGCCTGCAATTGCAATATTGCATGGAAGATGAGAACCAGCAATTCAGCCCTGATTCAGTTTTAGATGGATTTACATC
TACTACTCATGAAGAAGCCTCTTCTCCAGCTAATAATAAGATCAGGGATGTTTCCAATTCATCATATGAAGTCATTTTACATAAGAGATCAATCTCCAGA
GTAGAGGTGTCTCAGCAACTTCTGTTAGATTGCATAGCAGAAGTTGTTGAAATGGCCCATGGAAGCTGCAGTAGGAAGAAACTGTGGGGTACAAGTGAGA
GGATACTAAGATCATGGTCAGGGAGGAAAGGCAAGCCTTTTCATAACTTGGAGCTATGCGATCAGGGCATTATTATCGACAAATGGAGCGATGATGAACA
GCGGAGGGAGATTGGACTGGAGATTGAAGATCTAATTTTCCAAGAGATCATGGTGGACTTGATTGGTGTAGAGATTATTAATTAG
AA sequence
>Lus10007724 pacid=23149243 polypeptide=Lus10007724 locus=Lus10007724.g ID=Lus10007724.BGIv1.0 annot-version=v1.0
MAAAASQVKQLGEILKEQQEPFILQTYLIEKGCFNGKPNKEQVSLGCFNGKKHSSRKKGIHKLVRILIGSINKRGKSSEKTLQAERLSSFDSSCSTALDW
GSGDEEENREICSSSSSSGNKCSYLDLQFCNPNDQKQINGVGLQLQYCMEDENQQFSPDSVLDGFTSTTHEEASSPANNKIRDVSNSSYEVILHKRSISR
VEVSQQLLLDCIAEVVEMAHGSCSRKKLWGTSERILRSWSGRKGKPFHNLELCDQGIIIDKWSDDEQRREIGLEIEDLIFQEIMVDLIGVEIIN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10007724
[exp]
0 1
AT1G69850 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) Lus10015240
[exp]
6.2 0.8126
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Lus10026510
[exp]
6.6 0.7941
AT5G55060 unknown protein Lus10043118
[exp]
9.5 0.7762
AT5G22850 Eukaryotic aspartyl protease f... Lus10021397
[exp]
10.7 0.7721
AT4G13250 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-... Lus10023644
[exp]
17.3 0.7686
AT1G69850 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) Lus10005417
[exp]
22.8 0.7603
AT2G16980 Major facilitator superfamily ... Lus10023994
[exp]
23.7 0.7723
AT3G47730 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, AT... Lus10024244
[exp]
25.5 0.7150
AT2G17840 ERD7 EARLY-RESPONSIVE TO DEHYDRATIO... Lus10027840
[exp]
26.6 0.7503
AT5G63800 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-gala... Lus10033502
[exp]
27.7 0.7580

Lus10007724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.