Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59540 826 / 0 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10180 429 / 3e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 282 / 2e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G21380 275 / 2e-78 Kinesin motor family protein (.1) AT4G39050 272 / 2e-77 Kinesin motor family protein (.1) AT5G06670 270 / 4e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G21730 265 / 1e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G21300 259 / 5e-74 ATP binding microtubule motor family protein (.1.2) AT3G43210 260 / 6e-74 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT4G38950 254 / 2e-72 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018661 [exp] 1533 / 0 AT1G59540 924 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012103 [exp] 436 / 1e-135 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 430 / 2e-134 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041958 [exp] 280 / 1e-80 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017969 [exp] 280 / 5e-80 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10015448 [exp] 266 / 8e-80 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10005181 [exp] 275 / 3e-79 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10018145 [exp] 270 / 2e-76 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 267 / 3e-75 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G013300 [exp] 991 / 0 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G040700 [exp] 436 / 1e-135 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G161100 [exp] 285 / 7e-82 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G136600 [exp] 282 / 1e-81 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.009G122100 [exp] 281 / 2e-80 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.016G060400 [exp] 279 / 5e-80 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 275 / 3e-78 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G194900 [exp] 274 / 3e-78 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G014800 [exp] 259 / 3e-73 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 258 / 9e-73 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10007725 pacid=23149239 polypeptide=Lus10007725 locus=Lus10007725.g ID=Lus10007725.BGIv1.0 annot-version=v1.0 ATGGAGAAGATCTGCGTTGCTGTCAGAGTCAGGCCGCCGGTAGCTTCATCTCCTCTGGATACAACTTCCGGAGGAACTTACTGGTTAACCGAAGACAATC GCATCTCACTTCACAGGTCCGGTGGTACTCCCATCTCCGGGGTGTCTTATGCTTTCGATCACGTGTTTGATCAAGCTTCCTCCAACTCTACGGTTTACGA GCTACTCACTAAGGATATCATTGATGCCGCTGTTAAAGGTTTCAATGGTGAGCTAGCTCCTGAACGGGGTTTCCCTTTTCTCCGAACTGCGTTTGCTTAT GGACAGACGAGCAGTGGCAAGACGTTCACCATGAACGGATCAGAGAAGGATCTGGGAATCATTCACAGGGCAGTACGAGACATTTTTGACAAAATACAAG CCATATCTGATAGGGAGTTTCTAATTAGAGTTTCCTATATGGAAATCTATAATGAAGAAATCAATGACCTCTTTGCTGTAGAGAACCAAAAGTTGCCCAT TCATGAGAGTTTGGAGAGAGGCATATTTGTTGCTGGCCTCAGAGAGGAAATCGTGAATAGCGCTGAACAAGTACTTAAGCTCATGGAATCAGGAGAAGTC AACAGACACTTCGGGGAAACAAACATGAATGCTCGGAGCAGTAGATCTCACACAATATTCAGGATGGTGATCGAGAGTAAGGGGAAAGTGACAAACTCTT CAAGCGTTTATTCAAGTAGCGATGCTGTTCGAGTCTCTGTCTTGAATTTGGTCGATTTAGCTGGTTCAGAAAGAATTGCCAAAACAGGAGCAGGGGGTGT GCGTTTGAAAGAAGGAAAATACATTAACAAGAGTCTGATGGTTCTTGGTAATGTCATAAACAAACTAAGTGATGGTGGAAAGCAAAGGGCGCATATACCT TATCGCGACAGTAAACTAACTCGTATACTTCAACCTGCTCTTGGCGGTAATGCCAAAACTTCAATTATTTGCACCCTTGCTCCAGAAGAGATTCACGTTG AGGAAACTAAAGGAACTCTCTTGTTTGCCAGCCGAGCCAAACGCATAACGAATTGTGCTCAAGTGAATGAGATTTTAACTGATGCGGCCTTACTGAAGCG ACAGAAATTAGAAATAGAAGAGCTCCGAAAGAAACTTCAGGGATCTCATGCTGAAGTTCTGGAGCAAGAAATTCTGAACTTACGAAATGGGATGCTGAAG TACGAGCTAGAGAGGGAGAAACTTGAAATGCAGCTCGAAGAAGAGAGGAAGTCGCAGAAGGAAAGAGAACAACGTATTAGGGAGCAACAAATGAAAATTG ATAACCTAAGTAATATTGTCACCTCTGCAGATTGTGATAGGAGCTCTGGCCAGGGGCCGAGTGGTGGTACATCAAGACTAGTTGAAGAATTCAGTGACAA CAGCGGTGCTTTCCAAGCGGATTTGTTTAGAACCCCTAGCTTCAAGGCGACTCCTAATGCATTTGTCTCAAAAAGATCCAACAATGTGAGGCTACCTGAC TTCAGTCCTCTCCCAGAAACTTTGAGCAATGTGGCTGATGAAGACACCTGGATGAAATTAAATAATGGTTTCACCGTTGATTTTGACTCAATTCATATGA CCCCGGCTAGAAAAGTCCAGTCCTTCCCGGAAAACAACGTCACTCCTGGATATTCTCTTGAGAAGTACAGACTAGAGGTCCAAAATCTAAGAACAGAGCT GCAACTTGTCACTGTGGAGAAGAATGAAATCAAGGAGAAGAACTCGGAACTCTTGCTTCTCAATGATCGTTTGATACATGAAAAATCCGAGCTTGAAAAA CAACTAGATTTATTTAGTCGAATCCCTCAGAATTTTCTCAAGTATATTGCAAGTTCAGTTGACATCTACGAAGAAGCTTATTCGACATTACAGAGTTGCG CACCAGAGACGGAAGCTTCAACAGCAACATTGCTCTCCGCAACAAGAGAAATAGGCAAAACCGTGTTGTCAAATCTGGAAAGCTACATCTCCCGCGCAAT GGATGATTCTGCAGCGGAAGAAGAGTTGAAAATGCTTTCCCAGAGGTCAAAAGCCGTAGTTACATCATTAGCATCATCAGAAGTCTTCAAGTTACAGAGC GGAGAGAAGGATAACGAGTCTAAGGGATGCTGCACTGTGGCTGGACAAACTGCGGAAAATGACAAGAAAGAATTCGAGAGTGAGCTCAAGAGAATCAAGG AGAAGCATGACGAAGTGGTGACAACGCTGGAGCAGAACAGCAAGCTTCTGGAGGTATCTAGAGATAAGTACAGCAGGCTGGAAAGAGATATACAGATTCT GAATGAAGAGAGGGGATTGCTTGCCCATAGAGTCTCTGAACTACGTGGAAAGCTTGATGCAGCTAACGACGAGAAGGAAAATGTGGTGCAGGACTTGAAC TCGGAAGCACATAGAAGGAGAAACCTGGAAGCTGAGATCAAACAGTTGAGTGTTGCATTTGCTGGTCGGCAGAAGTCGTTCATAGCTTTTGATAGTGAGT TTAAAGCCAAAATGGAGCAACTGAGATCTCTTCTTCAGTCAGGTCCGGTATCCAAACCTCTTGGATTGTTGAATTCCTGA
AA sequence Show only first row Show all	>Lus10007725 pacid=23149239 polypeptide=Lus10007725 locus=Lus10007725.g ID=Lus10007725.BGIv1.0 annot-version=v1.0 MEKICVAVRVRPPVASSPLDTTSGGTYWLTEDNRISLHRSGGTPISGVSYAFDHVFDQASSNSTVYELLTKDIIDAAVKGFNGELAPERGFPFLRTAFAY GQTSSGKTFTMNGSEKDLGIIHRAVRDIFDKIQAISDREFLIRVSYMEIYNEEINDLFAVENQKLPIHESLERGIFVAGLREEIVNSAEQVLKLMESGEV NRHFGETNMNARSSRSHTIFRMVIESKGKVTNSSSVYSSSDAVRVSVLNLVDLAGSERIAKTGAGGVRLKEGKYINKSLMVLGNVINKLSDGGKQRAHIP YRDSKLTRILQPALGGNAKTSIICTLAPEEIHVEETKGTLLFASRAKRITNCAQVNEILTDAALLKRQKLEIEELRKKLQGSHAEVLEQEILNLRNGMLK YELEREKLEMQLEEERKSQKEREQRIREQQMKIDNLSNIVTSADCDRSSGQGPSGGTSRLVEEFSDNSGAFQADLFRTPSFKATPNAFVSKRSNNVRLPD FSPLPETLSNVADEDTWMKLNNGFTVDFDSIHMTPARKVQSFPENNVTPGYSLEKYRLEVQNLRTELQLVTVEKNEIKEKNSELLLLNDRLIHEKSELEK QLDLFSRIPQNFLKYIASSVDIYEEAYSTLQSCAPETEASTATLLSATREIGKTVLSNLESYISRAMDDSAAEEELKMLSQRSKAVVTSLASSEVFKLQS GEKDNESKGCCTVAGQTAENDKKEFESELKRIKEKHDEVVTTLEQNSKLLEVSRDKYSRLERDIQILNEERGLLAHRVSELRGKLDAANDEKENVVQDLN SEAHRRRNLEAEIKQLSVAFAGRQKSFIAFDSEFKAKMEQLRSLLQSGPVSKPLGLLNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10007725 [exp]	0	1
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027933 [exp]	1.7	0.9714
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	2.0	0.9773
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	4.5	0.9734
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	5.5	0.9680
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	6.7	0.9690
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10018341 [exp]	7.0	0.9653
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	7.2	0.9709
AT5G48310			unknown protein		Lus10025189 [exp]	8.5	0.9633
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	10.8	0.9616
AT3G17360		POK1	phragmoplast orienting kinesin...		Lus10017113 [exp]	11.3	0.9552

Compare expression of checked genes

Lus10007725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.