Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59530 71 / 3e-16 bZIP ATBZIP4 basic leucine-zipper 4 (.1) AT3G49760 70 / 7e-16 bZIP ATBZIP5 basic leucine-zipper 5 (.1) AT4G37730 72 / 2e-15 bZIP ATBZIP7 basic leucine-zipper 7 (.1) AT2G22850 68 / 2e-14 bZIP ATBZIP6 basic leucine-zipper 6 (.1.2) AT5G15830 63 / 9e-13 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT1G75390 61 / 3e-12 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT2G04038 61 / 5e-12 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT3G30530 61 / 5e-12 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT1G13600 61 / 6e-12 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT2G18160 58 / 5e-11 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018662 [exp] 226 / 2e-77 AT3G49760 82 / 2e-20 basic leucine-zipper 5 (.1) Lus10011722 [exp] 85 / 5e-21 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10011557 [exp] 74 / 2e-17 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10029101 [exp] 67 / 3e-14 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10024279 [exp] 66 / 6e-14 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10013059 [exp] 66 / 1e-13 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10019273 [exp] 65 / 2e-13 AT2G22850 94 / 2e-23 basic leucine-zipper 6 (.1.2) Lus10001347 [exp] 61 / 4e-12 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10041780 [exp] 59 / 2e-11 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G115900 [exp] 126 / 7e-38 AT1G59530 76 / 5e-18 basic leucine-zipper 4 (.1) Potri.014G013400 [exp] 119 / 5e-35 AT1G59530 77 / 8e-19 basic leucine-zipper 4 (.1) Potri.007G006900 [exp] 83 / 4e-20 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.014G007100 [exp] 81 / 2e-19 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.008G113400 [exp] 68 / 1e-14 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.010G135200 [exp] 68 / 2e-14 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.004G158200 [exp] 62 / 1e-12 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.004G111100 [exp] 61 / 6e-12 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.005G231300 [exp] 60 / 6e-12 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.017G106700 [exp] 61 / 8e-12 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10007726 pacid=23149221 polypeptide=Lus10007726 locus=Lus10007726.g ID=Lus10007726.BGIv1.0 annot-version=v1.0 ATGTTTGCAACCGAATTCGATTGCCCGGTTCATATCGAGCAGGGATTCACAGCCCATGATTTGGAAAACCTCTTGTCCATCTTCGACTCCCAAACGGGCG GTAGCCCTAACTCGAACTCCGGTTCGGAAGGGTGGTCAAACCGCTCGGTTAATTACGACGTGGATGAGAGAAAGGAGAGACGAATGAAATCGAACCGGGA GTCGGCCCGACGATCGCGGTGGAGAAAAAAGAGGCATTTGGAGAAGCTGACGGAGCAGGCTAACCGGTTGAGAATGGAGAACCAGGAGCTCAAGTACATG TTGGGTTCGACCTTGAGCCAGTGCCACGTCGTCCGGAGGGACAACCAACGGCTGAGATCGGAGTCGGTAGCTCTTCGAGGGAGGCTCACTCATTTGTGTC ACGCTTTAGTTGCCATGCACGGCCATGCAGTTAATAACGGCCTATGA
AA sequence Show only first row Show all	>Lus10007726 pacid=23149221 polypeptide=Lus10007726 locus=Lus10007726.g ID=Lus10007726.BGIv1.0 annot-version=v1.0 MFATEFDCPVHIEQGFTAHDLENLLSIFDSQTGGSPNSNSGSEGWSNRSVNYDVDERKERRMKSNRESARRSRWRKKRHLEKLTEQANRLRMENQELKYM LGSTLSQCHVVRRDNQRLRSESVALRGRLTHLCHALVAMHGHAVNNGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10007726 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	3.2	0.7858
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	4.7	0.7290
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	13.8	0.6950
					Lus10037674 [exp]	16.4	0.6997
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	17.7	0.6889
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10001548 [exp]	23.9	0.7005
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	26.6	0.6668
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	27.3	0.6700
AT5G66440			unknown protein		Lus10040435 [exp]	33.7	0.6398
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	46.1	0.6072

Compare expression of checked genes

Lus10007726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.