Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10150 419 / 8e-146 ATPP2-A10 Carbohydrate-binding protein (.1) AT1G59510 392 / 1e-135 CF9 Carbohydrate-binding protein (.1) AT3G49790 299 / 4e-99 Carbohydrate-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003785 [exp] 558 / 0 AT1G10150 447 / 1e-156 Carbohydrate-binding protein (.1) Lus10012487 [exp] 554 / 0 AT1G10150 439 / 2e-153 Carbohydrate-binding protein (.1) Lus10018663 [exp] 549 / 0 AT1G10150 342 / 2e-116 Carbohydrate-binding protein (.1) Lus10011718 [exp] 284 / 3e-93 AT1G10150 288 / 2e-94 Carbohydrate-binding protein (.1) Lus10039651 [exp] 280 / 1e-91 AT1G10150 298 / 2e-98 Carbohydrate-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G116400 [exp] 481 / 5e-170 AT1G10150 387 / 1e-132 Carbohydrate-binding protein (.1) Potri.014G014100 [exp] 464 / 1e-163 AT1G10150 401 / 3e-138 Carbohydrate-binding protein (.1) Potri.007G006600 [exp] 395 / 3e-136 AT1G10150 355 / 8e-120 Carbohydrate-binding protein (.1) Potri.014G006800 [exp] 369 / 8e-126 AT1G10150 350 / 5e-118 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007727 pacid=23149218 polypeptide=Lus10007727 locus=Lus10007727.g ID=Lus10007727.BGIv1.0 annot-version=v1.0 ATGGATCTTGGATTGGTGAAGGCAAAAGGGTTGGGACTGTACAGACGGAGAAAGAAGTGGCTGTTTTTGGCAGGAGTTATCGGCGTCTCCGGTTACGGCG CTTACAAGGTTTATAACTTGCCTTCCGTCGCTACGAAGCGGCGGAGGCTGATGAAACTCGCCGGCGCTTTGGCTTCCGTTGCTGAGATGGTGTCTGATTC CGCCGAGACGATGGGTATCGTTTCTAGGGACATGAAAGAGTTTCTGATGTCGGATTCCGACGAGATCCCCAATAGCTTGAAGCAAATCTCCAAACTCACA AAATCGGCCGAGTTCTCCGACTCCTTGACTTTAATTTCTCGTGCTTTGACCGTTGGAATTTCGCGTGGTTCTGGCTCCGTGGAGGATCAATCGGCGAATA ACTCCGGTATGAGCGATCAGCTGAGTGAGAAACTATTCTCTGAAGCAGGGACTGGATTTATGTCAGTTGTGGTTGGAAGCTTTGCTAGAAATTTGGTTAT GGGGTTCTACTCAGCTGGTGATGAAAACTGTTCTTCATCTACTGATGATGTGCCTAAATGGGTTAGCGTGATTTCTAACGAGCAGTGTAAGGAGGTGATA GCTGATTGTATACAGCAGTTCGTGAGCACTGCAGTCACTGTGTTTCTCGACAAGACAATCCACATCAACACATACGATCAATTCTTTGCTGGCCTTACGA ATCCGAGCCATGGGAATGATGTCAGAGACGTTCTGGTTGATATCTGCAACGGGTCTGTCGAAACCCTTGTGAAAACTTCGCACCATATCTTGACAACAAC AAGCTCGAATCCCAAATCCGAAGAAGGCGACGATTCATTGGATGGCGGTGGATGGGTTAAGCAGGTATCGTCTACATTGGCAGTGCCGAGTAACAGGAAG TTTGTGGTGGATGTGACCGGAAGGGTGACGTTCGAGACGGTGAGATCGGTTGTTGAGGTATTGTTGTGGAAGATGTGTGATGGTGTGAAAACAAGTGTAA ATGCAGTTCATGATGGAGTAGTGGAAAGGGGGATTGAAGTTGTTAGATATGTTGGTGCTAAGTCTTCTGTCATCGTTACCATTTGCCTAGCATTGTATTT GCATATAGTCGGCGACGCCAGGGTTTTCTTGCCTGCTGCTTAA
AA sequence Show only first row Show all	>Lus10007727 pacid=23149218 polypeptide=Lus10007727 locus=Lus10007727.g ID=Lus10007727.BGIv1.0 annot-version=v1.0 MDLGLVKAKGLGLYRRRKKWLFLAGVIGVSGYGAYKVYNLPSVATKRRRLMKLAGALASVAEMVSDSAETMGIVSRDMKEFLMSDSDEIPNSLKQISKLT KSAEFSDSLTLISRALTVGISRGSGSVEDQSANNSGMSDQLSEKLFSEAGTGFMSVVVGSFARNLVMGFYSAGDENCSSSTDDVPKWVSVISNEQCKEVI ADCIQQFVSTAVTVFLDKTIHINTYDQFFAGLTNPSHGNDVRDVLVDICNGSVETLVKTSHHILTTTSSNPKSEEGDDSLDGGGWVKQVSSTLAVPSNRK FVVDVTGRVTFETVRSVVEVLLWKMCDGVKTSVNAVHDGVVERGIEVVRYVGAKSSVIVTICLALYLHIVGDARVFLPAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10007727 [exp]	0	1
AT1G21400			Thiamin diphosphate-binding fo...		Lus10028648 [exp]	2.6	0.9546
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	3.0	0.9668
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	4.9	0.9604
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	6.6	0.9534
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10015015 [exp]	7.7	0.9424
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	8.5	0.9572
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	8.5	0.9623
AT2G38410			ENTH/VHS/GAT family protein (....		Lus10025264 [exp]	8.9	0.9509
AT5G54940			Translation initiation factor ...		Lus10021532 [exp]	10.2	0.9229
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	12.3	0.9543

Compare expression of checked genes

Lus10007727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.