Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10140 77 / 1e-17 Uncharacterised conserved protein UCP031279 (.1) AT1G58420 72 / 8e-16 Uncharacterised conserved protein UCP031279 (.1) AT5G65925 43 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018665 [exp] 303 / 2e-106 AT1G10140 89 / 2e-22 Uncharacterised conserved protein UCP031279 (.1) Lus10012496 [exp] 162 / 1e-50 AT1G58420 86 / 4e-21 Uncharacterised conserved protein UCP031279 (.1) Lus10012440 [exp] 40 / 0.0002 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014500 [exp] 102 / 1e-27 AT1G58420 81 / 9e-20 Uncharacterised conserved protein UCP031279 (.1) Potri.014G014600 [exp] 100 / 4e-27 AT1G58420 87 / 4e-22 Uncharacterised conserved protein UCP031279 (.1) Potri.002G117100 [exp] 90 / 8e-23 AT1G58420 84 / 1e-20 Uncharacterised conserved protein UCP031279 (.1) Potri.001G290400 [exp] 52 / 1e-08 ND / Potri.014G006300 [exp] 39 / 0.0005 AT1G58420 56 / 3e-10 Uncharacterised conserved protein UCP031279 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007729 pacid=23149220 polypeptide=Lus10007729 locus=Lus10007729.g ID=Lus10007729.BGIv1.0 annot-version=v1.0 ATGAGTAGATCCAAATCCGGACAGAATCACAACATATTCGTCCGGATAATCACTTCCCCAATCCGAGCCCTGGGAAAAGCCAAGGATCTCTACGTCCGAA GCTTAACGGATTGCGCCGCCGGACCCCGCCAAAAGCGCCGCCGCAATACCTACTACAACAACAATAACGCCCCCCTTCCCCTTCCCCGTAGCCTCAGCGT CGCCTCTTCCATCACAAATATCGGCAGAGGAGGAGGAGAAGACATCCAGGAGCTAATGAGGGCGGCCTCCGTCCGGTACTACGGCCACCAGAACGAGGCG GAGATGTATGTGCAGCAGCTCCGGCAGATCCGGCAGCAGGAGAGGGAGGCTTCTAGATCTGATCATCAGAAGGCGCTTCCCAAGAGTGTCAGCGTCGGGA TGGGGTTTATGGGGAGGATTGACGAGGACAACGCCTGTGAAGAATTCGAAGACGACGCCGCCGCCGGGAAAACTGACAAGCTGGGGGACAAGTATCCGCG AGGCAGCGCCGGCGCCGGGAAAATTGACAAGCTCGGGGATAAGTATCCCCGGAGCAAGAGCTACGCGCCTGTTTCCAATCGGCTGGTCGTTTTCTAA
AA sequence Show only first row Show all	>Lus10007729 pacid=23149220 polypeptide=Lus10007729 locus=Lus10007729.g ID=Lus10007729.BGIv1.0 annot-version=v1.0 MSRSKSGQNHNIFVRIITSPIRALGKAKDLYVRSLTDCAAGPRQKRRRNTYYNNNNAPLPLPRSLSVASSITNIGRGGGEDIQELMRAASVRYYGHQNEA EMYVQQLRQIRQQEREASRSDHQKALPKSVSVGMGFMGRIDEDNACEEFEDDAAAGKTDKLGDKYPRGSAGAGKIDKLGDKYPRSKSYAPVSNRLVVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	0	1
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	2.6	0.9413
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	7.5	0.9277
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	8.7	0.9250
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10027638 [exp]	12.4	0.9217
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	12.5	0.9089
AT1G76360			Protein kinase superfamily pro...		Lus10012256 [exp]	13.0	0.9194
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	13.2	0.9191
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10008693 [exp]	13.5	0.8566
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10010956 [exp]	15.7	0.8483
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	18.5	0.9136

Compare expression of checked genes

Lus10007729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.