Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04600 220 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60900 52 / 8e-08 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT4G26650 51 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G47120 50 / 4e-07 C3HZnF RNA recognition motif (RRM)-containing protein (.1) AT5G51300 49 / 1e-06 splicing factor-related (.1.2.3) AT3G07810 48 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G71800 47 / 4e-06 CSTF64 cleavage stimulating factor 64 (.1) AT2G43370 47 / 4e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G40490 47 / 5e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13850 44 / 9e-06 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018666 [exp] 347 / 1e-122 AT5G04600 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023191 [exp] 49 / 1e-06 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10002222 [exp] 49 / 1e-06 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10017555 [exp] 46 / 1e-05 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017923 [exp] 45 / 2e-05 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10002063 [exp] 45 / 2e-05 AT4G27000 275 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038932 [exp] 45 / 2e-05 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10018345 [exp] 45 / 3e-05 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018227 [exp] 45 / 3e-05 AT3G47120 298 / 1e-99 RNA recognition motif (RRM)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234800 [exp] 254 / 2e-86 AT5G04600 260 / 1e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G050400 [exp] 50 / 5e-07 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.001G126400 [exp] 49 / 1e-06 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.004G040900 [exp] 49 / 2e-06 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.015G005500 [exp] 47 / 2e-06 AT2G46780 145 / 1e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G033400 [exp] 47 / 3e-06 AT2G43370 341 / 8e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G022100 [exp] 47 / 4e-06 AT2G46780 161 / 1e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G107200 [exp] 47 / 4e-06 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.003G040900 [exp] 45 / 1e-05 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G105101 [exp] 45 / 2e-05 AT2G46780 252 / 4e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10007730 pacid=23149261 polypeptide=Lus10007730 locus=Lus10007730.g ID=Lus10007730.BGIv1.0 annot-version=v1.0 ATGGGCGCAAAGGCGAAGAAAGCTCTGAAGGCTAAACTGAAGAAAGTCACCTCTGCATCCAAAGTCTCCGAGAAGAAAGAAATTGCAGCTGCAGCAGCTG CAGATTTCTTGCCACTAGCTGGAGGGCGCGGCCGGAAGATACCGGAGGAGAAGCCGCTGGAAAGCACTGCCAAGCCTACCGTTCTCTACATTGGTCGGAT TCCCCACGGTTTCTATGAGAGCGAAATGGAAGCTTACTTTTCTCAGTTTGGGAAGATTAAGAGATTCAGAGTTGCCAGGAACAGAAAGACTGGAAAATCG AAGCATTATGGATTCATGGAATTTGAAGATCCCGAGGTTGAAGTAGCTGAAATAGTGGCAGATTGCATGCATAATTATCTTCTGTTTGAGCATCTTCTGC AAGTTCACCTTATCCCACAGGAGAAAGTTCATCCAAAAATGTGGAGGGGTTACTACAAATACAAGCCGGTAGACCGAGTGAAGATCCAACGTAAGAGGCA GAGCAAGGAGAGAACACTAGAAGATCACAATAAGTTGGTGCAGAAGATTAAGAAGCAAAGCCAGAAACGGCAGAGGAGCATAACTGCTGCTGGGATTGAT TATGATTGCCCCGACATTGTAGGTGAGGTGTTACATGCTCCGAAGAAGATCAAATTTTCCGAGGACTAG
AA sequence Show only first row Show all	>Lus10007730 pacid=23149261 polypeptide=Lus10007730 locus=Lus10007730.g ID=Lus10007730.BGIv1.0 annot-version=v1.0 MGAKAKKALKAKLKKVTSASKVSEKKEIAAAAAADFLPLAGGRGRKIPEEKPLESTAKPTVLYIGRIPHGFYESEMEAYFSQFGKIKRFRVARNRKTGKS KHYGFMEFEDPEVEVAEIVADCMHNYLLFEHLLQVHLIPQEKVHPKMWRGYYKYKPVDRVKIQRKRQSKERTLEDHNKLVQKIKKQSQKRQRSITAAGID YDCPDIVGEVLHAPKKIKFSED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	0	1
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	1.4	0.8744
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	4.5	0.8463
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	6.1	0.8795
AT1G15420			unknown protein		Lus10007894 [exp]	7.5	0.8691
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	7.5	0.8424
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	7.9	0.8095
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10042209 [exp]	8.9	0.8413
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	9.7	0.8098
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	10.6	0.7490
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	11.7	0.8066

Compare expression of checked genes

Lus10007730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.