Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10450 498 / 3e-175 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT5G09640 496 / 8e-174 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT2G22990 488 / 3e-171 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT1G73300 484 / 1e-169 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G73280 482 / 1e-168 SCPL3 serine carboxypeptidase-like 3 (.1) AT5G36180 479 / 1e-167 SCPL1 serine carboxypeptidase-like 1 (.1) AT2G23010 479 / 1e-167 SCPL9 serine carboxypeptidase-like 9 (.1.2) AT1G73270 477 / 1e-166 SCPL6 serine carboxypeptidase-like 6 (.1) AT3G12203 476 / 1e-166 SCPL17 serine carboxypeptidase-like 17 (.1) AT1G33540 474 / 1e-165 SCPL18 serine carboxypeptidase-like 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018667 [exp] 824 / 0 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10007732 [exp] 473 / 4e-165 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10010895 [exp] 471 / 4e-164 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10012718 [exp] 390 / 1e-133 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10025859 [exp] 355 / 4e-118 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 348 / 2e-115 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 327 / 7e-107 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 312 / 3e-101 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026830 [exp] 295 / 3e-94 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124900 [exp] 555 / 0 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 485 / 1e-169 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 477 / 4e-166 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 471 / 1e-163 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G291700 [exp] 431 / 5e-148 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 424 / 3e-146 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 410 / 4e-140 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.014G177500 [exp] 372 / 1e-124 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 214 / 1e-63 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.005G091700 [exp] 206 / 8e-61 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10007731 pacid=23149263 polypeptide=Lus10007731 locus=Lus10007731.g ID=Lus10007731.BGIv1.0 annot-version=v1.0 ATGGCGCCGGAAACAATCTTTTACTGTGTCTTCCTCCTTCTCCTCACTTGGCGAGAGGCAGCAGCAGCAGCAGCTTCTTCTCAAGCTACAGTCTCTCAAC TTCCGGGATTCAACGGCCCACTTCCCTTTCACCTCGAAACAGGGTATGTCGGAGTGGGAGAATCGGAGCAAGTTCAACTGTTCTACTACTTCGCTAAGTC GGAGAATAATCCTGAGGAAGATCCGGTGGTGCTTTGGCTCACCGGCGGCCCTGGCTGCTCTGCTTTGTCCGGTCTTGTCTATGAAATTGGTCCGATAAAC TTCGAGGTTAAGGAGTACAACGGGAGCTTGCCTTCACTTGTATTGAACCCAAATTCATGGACGCAGGTGGCTAGCATAATCTTCGTGGATCTGCCGGTTG GAACAGGGTTTTCATATGCAACAACAGATGAAGCTTCTCAATCAGGTGATTTTCTGCAGATTCAACAAGCTCATGACTTCTTCAGGAAGTGGTTGATCGA CCATCCGGAGTTCATATCGAACCCGGTTTATGTAGGAGGGGACTCCTACTCTGGCCTAATTGTTCCAGGTGTAGTTGCTACTATTTCAGACGGGAATGAG GAGGGGAAGACACCATTCATCAATCTCAAGGGGTACTTACTAGGGAATCCTGCAACAGATCAATTGTTCGAGAGTAACTTTGAGATCCCATATGCGTATG GCATGGCTCTCATTCCTTATGAACTCTTTCAGTTGTTGAAGAGAAGTTGTGGAGGAAACTATAACAGCCCTGACCCTAGTAATGCTGCGTGTGTGAAAAG CCTTCAGGCCTATCACAAGTGCACTGCTGGAATTAACTTTGCACAAATTCTGGAGCCAGCTTGTGCATTCTATTCCCCAAAGCCTATGGAGATGATATTC TACAGGAAAAGATACCTGAAGCAGGATTTCCTGAAGCTCCTCAAGGATCAACTTCCTGCAATTGGCTGTCGTACTTATGGATATCTTCTCTCCAAATATT GGGCCAATGACCAATCTGTGCGCAGAGCACTTCATATCAGAGAGGGAAGCATAGGAACATGGAAGAGATGCAATAACGGATTGCCATATAAGCATGAGAT ATGGAGGAGTGTTGATTATCATTTGTATCTCTCGAAGAAAGGCTACCGTTCGTTAATCTACAGTGGTGATCATGACATGATGATGACTTACTTGGGAACC CAAGCATGGATACGAAAACTCAACTTCTCCATCGTCGATGATTGGAGATCATGGCATGTCGACAACCAAGTTTCGGGGTATACGAGGACGTACTCTAATA AGATGACATATGCAACAGTCAAGGGAGGAGGGCATACAGCTCCAGAGTACAGGCCGTCTGAATGTTTAGCAATGTTTAGAAGGTGGATCACTGGGAAACC CTTGTAG
AA sequence Show only first row Show all	>Lus10007731 pacid=23149263 polypeptide=Lus10007731 locus=Lus10007731.g ID=Lus10007731.BGIv1.0 annot-version=v1.0 MAPETIFYCVFLLLLTWREAAAAAASSQATVSQLPGFNGPLPFHLETGYVGVGESEQVQLFYYFAKSENNPEEDPVVLWLTGGPGCSALSGLVYEIGPIN FEVKEYNGSLPSLVLNPNSWTQVASIIFVDLPVGTGFSYATTDEASQSGDFLQIQQAHDFFRKWLIDHPEFISNPVYVGGDSYSGLIVPGVVATISDGNE EGKTPFINLKGYLLGNPATDQLFESNFEIPYAYGMALIPYELFQLLKRSCGGNYNSPDPSNAACVKSLQAYHKCTAGINFAQILEPACAFYSPKPMEMIF YRKRYLKQDFLKLLKDQLPAIGCRTYGYLLSKYWANDQSVRRALHIREGSIGTWKRCNNGLPYKHEIWRSVDYHLYLSKKGYRSLIYSGDHDMMMTYLGT QAWIRKLNFSIVDDWRSWHVDNQVSGYTRTYSNKMTYATVKGGGHTAPEYRPSECLAMFRRWITGKPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	0	1
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	1.4	0.9628
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10024030 [exp]	3.0	0.9647
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	3.2	0.9575
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	3.5	0.9626
AT5G49710			unknown protein		Lus10015965 [exp]	4.5	0.9586
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10003945 [exp]	5.5	0.9422
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033852 [exp]	6.3	0.9464
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	6.3	0.9533
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	7.0	0.9540
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	8.2	0.9508

Compare expression of checked genes

Lus10007731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.