Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73280 423 / 7e-146 SCPL3 serine carboxypeptidase-like 3 (.1) AT1G73300 419 / 2e-144 SCPL2 serine carboxypeptidase-like 2 (.1) AT5G36180 418 / 8e-144 SCPL1 serine carboxypeptidase-like 1 (.1) AT3G12203 415 / 8e-143 SCPL17 serine carboxypeptidase-like 17 (.1) AT3G12230 414 / 2e-142 SCPL14 serine carboxypeptidase-like 14 (.1) AT3G10450 414 / 2e-142 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT1G33540 412 / 2e-141 SCPL18 serine carboxypeptidase-like 18 (.1) AT1G73270 408 / 1e-139 SCPL6 serine carboxypeptidase-like 6 (.1) AT1G73290 407 / 1e-139 SCPL5 serine carboxypeptidase-like 5 (.1) AT3G12240 406 / 3e-139 SCPL15 serine carboxypeptidase-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010895 [exp] 523 / 0 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10018667 [exp] 544 / 2e-178 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10007731 [exp] 478 / 5e-167 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10012718 [exp] 411 / 6e-142 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10025859 [exp] 295 / 7e-95 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 284 / 1e-90 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 273 / 3e-86 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 262 / 1e-78 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 258 / 1e-77 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124900 [exp] 464 / 7e-162 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 392 / 4e-133 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 392 / 5e-133 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 382 / 2e-129 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G291700 [exp] 359 / 3e-120 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 347 / 2e-116 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 339 / 1e-112 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.014G177500 [exp] 291 / 2e-93 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 287 / 4e-92 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.006G036400 [exp] 152 / 4e-41 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10007732 pacid=23149224 polypeptide=Lus10007732 locus=Lus10007732.g ID=Lus10007732.BGIv1.0 annot-version=v1.0 ATGGAGAAACCAAGCATCCTCTGCTTTCATGGGTTGGCTCTTGTGCTCCTGGCATTTCATTTTGAATCAGCTACCGTCATAAAGTATCTTCCTGGATTTG AAGGGCCACTTCCGTTTTACTTCGAAACCGGGTATATTGGTGTTGGAGATGCAGAGGAAGTAGAGCTGTTTTACTACTTCGTAAAGTCGGAGACGAATCC TGAAGAAGATCCTATGCTTCTCTGGATATCGGGCGGCCCTGGCTGCTCTGCCTTGTCCGGCCTCACCCTTGAAAATGGTCCTTTTACCTTCAAAGAATTG GAATACAATGGAAGCTTGCCAACTTTGTTGCTCAAGCCAAATTCCTGGACCAAAATTTCGAGTGTAATATATATTGACCTTCCCGTTGGGACCGGATTCT CTTACGCAACTAATTGTTCTTCTCCCCGGTCAAGTGACCGTCTCCAAGTTTCTCATGCTGATGAGTTCCTTAGAAAATGGCTAAGGGGACATACTGAATT CCTGACGAATCCACTTTACATCTCGGGGGATTCCTATTCCGGCATCACCATTCCAGCTATAGTCCAACGCCTCTCTATTGGAAACGAAAAGGGCATTGAG CCGATGTTGAACCTCAAGGGATTGCAAAAAAGCTGTAAGGAAGAGTACTCCAAAGTGGATCCAACCAACTTGGAATGTAAGAATAACTTAAAGACTTACC GCCAGTGTCTGTCTGGGATTAACAAAGGGTCAATATTGGAACCTATAACATGCGGGGTTGCTTCGCCAAATCCGTTAATGGAGGAGGAGGAAATTGCTGA ATTTGATCAAGGAAGGAGAATGCTACTACATGATCACTATGATGATGATGATGATGGTGATGATGGTGACTCTCAACTCTCCCTTCCCACTGATCCATCT AACCCTGACTGTAAAAGTCGTCGTACGCTGCTTTGCAGATACTGGGCCAACGATGATACAGTCCGCAAAGCACTTCACATAAGACAGGGGACAATAGGGG AGTGGCTCAGATGCAATTTTGGGTTGGATTACGAACACGACATTACTAGCAGCTTCGAATATCATCTCCACCTTTCAACCAAGGGTTATCGTTCATTGAT CTACAATGGAGATCATGATCTTCTGGTACCGTTCCTGGGAACGCAAGCTTGGATTCGAGCTCTCAACTATTCAATTGTTGAAGACTGGCGTTCTTGGCGT GTTCAAGGCCAAGTTGCAGGGTACACGAGAACCTATTCGAATGGAATGACCTATGCGACGGTGAAGGGTGGAGAACATGTTGCTTTGGAAAACAAGGCTG CTGAATGTTTTGCTATGTTCCAGCGATGGATACAGCATGAGCCTTTGTAA
AA sequence Show only first row Show all	>Lus10007732 pacid=23149224 polypeptide=Lus10007732 locus=Lus10007732.g ID=Lus10007732.BGIv1.0 annot-version=v1.0 MEKPSILCFHGLALVLLAFHFESATVIKYLPGFEGPLPFYFETGYIGVGDAEEVELFYYFVKSETNPEEDPMLLWISGGPGCSALSGLTLENGPFTFKEL EYNGSLPTLLLKPNSWTKISSVIYIDLPVGTGFSYATNCSSPRSSDRLQVSHADEFLRKWLRGHTEFLTNPLYISGDSYSGITIPAIVQRLSIGNEKGIE PMLNLKGLQKSCKEEYSKVDPTNLECKNNLKTYRQCLSGINKGSILEPITCGVASPNPLMEEEEIAEFDQGRRMLLHDHYDDDDDGDDGDSQLSLPTDPS NPDCKSRRTLLCRYWANDDTVRKALHIRQGTIGEWLRCNFGLDYEHDITSSFEYHLHLSTKGYRSLIYNGDHDLLVPFLGTQAWIRALNYSIVEDWRSWR VQGQVAGYTRTYSNGMTYATVKGGEHVALENKAAECFAMFQRWIQHEPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12203		SCPL17	serine carboxypeptidase-like 1...		Lus10007732 [exp]	0	1

Compare expression of checked genes

Lus10007732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.