Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10130 1565 / 0 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT1G07670 788 / 0 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 784 / 0 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT4G00900 779 / 0 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT1G27760 527 / 2e-173 SAT32, ATSAT32 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) AT3G57330 305 / 4e-86 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 291 / 3e-81 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT5G57110 283 / 2e-78 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G29900 280 / 1e-77 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT4G37640 273 / 2e-75 ACA2 calcium ATPase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018668 [exp] 1746 / 0 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10042843 [exp] 785 / 0 AT1G07670 1799 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10028139 [exp] 783 / 0 AT1G07670 1798 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10018689 [exp] 750 / 0 AT1G27760 565 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Lus10023328 [exp] 709 / 0 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10038484 [exp] 402 / 6e-122 AT1G07670 816 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10035439 [exp] 279 / 3e-77 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 276 / 4e-76 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10031053 [exp] 275 / 4e-76 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014700 [exp] 1644 / 0 AT1G10130 1659 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.002G117400 [exp] 1629 / 0 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.009G025700 [exp] 773 / 0 AT1G07670 1743 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.001G233400 [exp] 769 / 0 AT1G07670 1800 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.014G101900 [exp] 759 / 0 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.014G016800 [exp] 580 / 0 AT1G27760 563 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Potri.002G119100 [exp] 568 / 0 AT1G27760 539 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Potri.016G043100 [exp] 313 / 1e-88 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.013G040201 [exp] 297 / 2e-83 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G052700 [exp] 291 / 2e-81 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus CL0137 [flax] [poplar] PF04836 [flax] [poplar] IFRD_C Interferon-related protein conserved region CL0020 [flax] [poplar] TPR PF05004 [flax] [poplar] IFRD Interferon-related developmental regulator (IFRD) CL0020 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0020 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10007734 pacid=23149268 polypeptide=Lus10007734 locus=Lus10007734.g ID=Lus10007734.BGIv1.0 annot-version=v1.0 ATGGGGAAACGTAGTAATAGAAGGAAGAATGCCGCCATGTTGGACAGTGATGATGAGGATAATAGTAGCGTGAGTTCGTCGTCTACTGTTCGTTCGGATC GTATGTCTGTCAATGGGACTGAAGAGGTTGAGGTTGAGAAGGATAACTTGCTAGATCAGGCTTTGGATGCTTTGTACGAGAAGAGGAGTACAACAAGAGA AAAAGCGTTGGCTTCAATTATCGAGGCTTTCAATACCAATTTGCAGCATGAGTTTGTGGAAAAGAAGTTTGCAACTTTGCTACATCAATGTATTAGCTGC ATTAAAAAAGGGTCCACCACAGAGATAGCTCTTGCTTCTCATGCCATTGGATTATTGTCATTGACGGTTGGTTCTGGGGATAATGCCCGTGAAATATTGG AAGAGTCGCTCGCTCCAATTTCCCAGGCACTCAAGTCTGGAACAGACTCGTTGAGGAGGGTAGCATTGTTGGAGTGTCTTGCTATCATAACTTTTGTTGG TGGAGACGATCCTGAGCAAACAGAACAATCTATGCAGATCATGTGGCAGTTGGTTCGGCCTAAGCTTGGCCCAAATGTTGTTGCTGTCAAACCTTCTAGT GCTGTAATTACAGCAGTGGCGTCTGCTTGGGCATTTCTTTTGACATCCATGGACCAGAGGACACTAAGCCCCAAGGATTGGCAAGAGTCCATTTCATACT TCTCTACTCTCCTCGACAAGGAGGACCGAACTATTCGCATTGCAGCTGGTGAAGCACTGGCTTTTATTTTTGAGACGGGATGCCTAGAAAAGTTTGCTGC TGAGGGTGTGGAAAGCTCAGTTCAAGATGGGGATAAATCGTATACACACCTACGAGGTCTAAAAGCGAAAATCTTAAATCAAGTGAGAGACCTCGCAGCA GAGGCCGGAGGAAAAGGGTCAGCGAAGAAAGACCTGAACAGCCAGCGGAACTTGTTTAAGGACATCCTGGAGTTCATTGAGGACGGTTACAGTCCTGAAG TCACAGTGAAGATAGGTGGAGATCCATTCCAGACGTCCACCTGGTATCAACTTACACAGCTTAACTTCTTGAAGCATTTTCTTGGTGGTGGCTTTGTCAA ACACATGCAGGATAATGAATTCCTCCAAGATGTACTTGGATTCGCACCAAAGAAAAAGCTTTTTCAGGGTGCTGATTCTCAGCTATCAAGTGGTGATAAG AGAATGTTCCGGTCACCAAATTCGGTTATGAACAAAGCCAGAACTCAATACCTAAACAAGCAACGAATGCTGTCTGAGGTGAAGATATTGTTGATGTGGA TGGTGTCTTTGAGACTGATAAATGTTCTTCCACATGGTCAACAAGCTGCGATTGGCGGGGCACAATTCTCTGCCAAACCTGAGAACAGCCCTATGGATCT TGTTTCACCCGCAATGAATTTGGAGAATGGTGGTGCTGCTGTGCATATTGGACATCCTTTTGGTTCTTTGAATCCTTCTCAAGGAGGAAACCATAGTGCT GCTGCGGAACAAATGTGGATGTACAAGAACAATGAGACTGGTAGCTATCCTTGTGCGCCTGTGGGAACCCAGGGACAGGATATGCCTCCACCACCTCATT TTCAGCAGGCCCCATATGCTCAACCTGTATACCAACCTCCCAATAGTTCCTGGGATCCTCGGGGTTCAAATCATCATGTTCCTTTCAATCAGGAGCCGTC AGCAGTGATGAATACTAGCTTCCAGGGAAGCACTGTTGCACCTCCTTTTGTGGCCGCATCATCGACTCCGTTAGCACATGGACCAGATTGGTTACGTAGG GCGAGAACTCCTTTCTGGAAATTGGTTCTGAAACAGTTTGATGATTTACTTGTTAAGATACTGATAGCTGCTGCAATTGTTTCTTTCGTTTTGGCTTTGA TCAACGGGGAAACTGGCCTGACTGCCTTTGTGGAGCCTTTTGTTATTCTCTTGATTTTGGCTGCCAATGCTGCAGTTGGCGTTATTACAGAAACGAATGC TGAAAAAGCTCTCGAGGAATTACGTGCCTATCAAGCTGAAGCTGCAACTGTGCTGCGGAATGGCTGTTTTTCAATACTTCCGGCAGCAGATCTTGTTCCC GGTGACATAGTGGAAGTGACAGTGGGATGCAAGGTTCCAGCTGACATGAGAATGATTGAGATGTTAAGTGATCAGTTACGCGTGGACCAGGCAATCCTTA CTGGTGAAAGCAGTTCGGCTGACAAGGAGCTCGAGTCAACTGTGACAACCAATGCTGTATATCAGGACAAAACAAACATCCTTTTCTCGGGTACTGTTGT GGTCGCGGGAAGAGCAAGAGCTGTGGTTGTTGGAGTTGGTGCTAATACTGCTATGGGGAGCATACGCGATTCAATGTTACATACAGACGATGAAGCTACA CCACTCAAGAAGAAGTTGGATGAGTTTGGCAGTTTTCTGGCTAAGGTTATTGCAGGGATTTGTGTCCTAGTATGGATTGTAAACATAGGCCACTTCCGTG ATGCTGCTCATGGTGGTTTCTTCAGGGGGGCAATCCATTACTTCAAGATTGCAGTTGCTCTTGCAGTTGCTGCAATTCCCGAAGGACTTCCTGCTGTTGT TACCACGTGTTTGGCATTGGGAACAAAGAGGATGGCTCGGTTGAACGCGATTGTGCGGTCTTTGCCATCAGTTGAGACTTTGGGCTGTACTACTGTCATT TGCAGTGACAAGACAGGGACTTTGACCACAAATATGATGTCTGTCTCTAAGATATGTGTTTTGGACTCTTTTCATCATGGGCCTTTGGTCACCGAGTACA GTATAAGTGGGACCACTTATGCTCCAGATGGAATTATATACGACAACAATGGATTGCAGCTTGAACTGCCAGCTAAGTTGCCCAGTCTTCTTCACCTGGC TATGTGCTCAGCCCTTTGTAATGAATCCGTCCTGCAATACAACCCAGATAAAACATGTTATGAAAAAATTGGGGAGTCAACTGAAGTCGCACTTCGGGTT CTAGCAGAGAAGGTTGGTCTTCCTGGTTTCGATTCTATTTCGTCTGCTCTCCACATGCTAAGCAAGCACGAGCGCGCCTCCTACTGTAATCATTATTGGG AAAACCAATTCAGAAAGATTTCTGCATTGGAATTCTCACGTGATCGGAAGATGATGAGCGTCTTATGCAGTCAAAAGCACACACAAGTTATGTTTTCGAA AGGTGCCCCAGAGAGTATTTTGTCAAGATGCTCTCATATCCTCTGTAATGATAATGGGTCCACCATTCCGCTATCTGCTAACATTCGAGATGAAGTAGAA TCAAGGTTTCACAGTTTTGCAGGGAAAGAAACATTGAGATGCCTGGCTCTGGCCATGAAACAGATGCCTGTAGAGCAGCAGAGCCTCTCCCTGGATGATG AGAAGGGCCTGACTTTCATTGGGTTGGTTGGAATGCTTGATCCACCAAGAGAAGAAGTAAGAAATGCTATGCTTTCATGCATGACTGCTGGTATACGCGT CATTGTTGTTACTGGTGACAATAAGTCAACAGCAGAGTCACTTTGCCGGAAGATAGGCGCTTTCGATCACTTGGAAGATTTTTCCGGGCATTCTTATACT GCCTCGGAGTTTGAAGAACTTCCACCTTTACAGCAAACACTTGCTCTGCAACGCATGGCACTCTTTACTAGGGTGGAACCAACTCACAAAAAAATGCTGG TGGAGGCCTTGCAACATCAAAATGAAGTGGTGGCAATGACTGGTGATGGTGTGAATGATGCACCTGCCCTAAAGAAGGCAAACATAGGAATCGCCATGGG GTCTGGAACAGCAGTTGCAAAGAGTGCCTCTGATATGGTGTTGGCCGATGATAATTTTGCTTCAATTGTTGCGGCTGTTGCAGAAGGGAGGGCAATTTAT AATAACACAAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTTGTTTGTATCTTCGTGGCTGCTGTACTTGGAATACCAGACACCTTGG CTCCTGTCCAACTGCTATGGGTAAATCTGGTGACTGATGGCTTGCCAGCAACCGCAATTGGTTTTAACAAGCAAGATAGTGATGTTATGAAGGTCAAACC TCGGAAGGTTAATGAAGCAGTAGTTAGTGGATGGGTGTTTTTCCGTTATTTGGTTATTGGAGCCTACGTCGGCCTGGCCACAGTTGCAGGATTTGTGTGG TGGTTTTTGTACTCAGATAATGGTCCGAAATTACCATATCGAGAACTGATGAGTTTCGACACGTGTTCAACAAGGGATACTACTTACCCATGTAGCATAT TTGAGGACCGGCATCCATCAACTGTATCAATGACAGTGCTTGTTGTTGTTGAGATGTTTAATGCTCTAAACAATCTTAGCGAAAATCAGTCTCTATTTGT TATCCCTCCCTGGAGTAATATGTGGCTGGTTGGATCAATTATCCTGACTATGATCCTTCACGTACTAATCTTATATATCCCTCCTCTCTCTGTTCTTTTC TCTGTGACACCTCTGTCTTGGTCTGATTGGAAAATCATATTGTATCTTTCATTCCCTGTTATAATTATTGACGAAATCTTGAAGTTCTTCTCGAGAAAAC CAAACGGTTTGAGGTTGGGTCTTCGGTTCCGAAGGAATGATTTTATACCGAAGAGCGATCGCCATGATAAGTAA
AA sequence Show only first row Show all	>Lus10007734 pacid=23149268 polypeptide=Lus10007734 locus=Lus10007734.g ID=Lus10007734.BGIv1.0 annot-version=v1.0 MGKRSNRRKNAAMLDSDDEDNSSVSSSSTVRSDRMSVNGTEEVEVEKDNLLDQALDALYEKRSTTREKALASIIEAFNTNLQHEFVEKKFATLLHQCISC IKKGSTTEIALASHAIGLLSLTVGSGDNAREILEESLAPISQALKSGTDSLRRVALLECLAIITFVGGDDPEQTEQSMQIMWQLVRPKLGPNVVAVKPSS AVITAVASAWAFLLTSMDQRTLSPKDWQESISYFSTLLDKEDRTIRIAAGEALAFIFETGCLEKFAAEGVESSVQDGDKSYTHLRGLKAKILNQVRDLAA EAGGKGSAKKDLNSQRNLFKDILEFIEDGYSPEVTVKIGGDPFQTSTWYQLTQLNFLKHFLGGGFVKHMQDNEFLQDVLGFAPKKKLFQGADSQLSSGDK RMFRSPNSVMNKARTQYLNKQRMLSEVKILLMWMVSLRLINVLPHGQQAAIGGAQFSAKPENSPMDLVSPAMNLENGGAAVHIGHPFGSLNPSQGGNHSA AAEQMWMYKNNETGSYPCAPVGTQGQDMPPPPHFQQAPYAQPVYQPPNSSWDPRGSNHHVPFNQEPSAVMNTSFQGSTVAPPFVAASSTPLAHGPDWLRR ARTPFWKLVLKQFDDLLVKILIAAAIVSFVLALINGETGLTAFVEPFVILLILAANAAVGVITETNAEKALEELRAYQAEAATVLRNGCFSILPAADLVP GDIVEVTVGCKVPADMRMIEMLSDQLRVDQAILTGESSSADKELESTVTTNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLHTDDEAT PLKKKLDEFGSFLAKVIAGICVLVWIVNIGHFRDAAHGGFFRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVI CSDKTGTLTTNMMSVSKICVLDSFHHGPLVTEYSISGTTYAPDGIIYDNNGLQLELPAKLPSLLHLAMCSALCNESVLQYNPDKTCYEKIGESTEVALRV LAEKVGLPGFDSISSALHMLSKHERASYCNHYWENQFRKISALEFSRDRKMMSVLCSQKHTQVMFSKGAPESILSRCSHILCNDNGSTIPLSANIRDEVE SRFHSFAGKETLRCLALAMKQMPVEQQSLSLDDEKGLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLEDFSGHSYT ASEFEELPPLQQTLALQRMALFTRVEPTHKKMLVEALQHQNEVVAMTGDGVNDAPALKKANIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIY NNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKVKPRKVNEAVVSGWVFFRYLVIGAYVGLATVAGFVW WFLYSDNGPKLPYRELMSFDTCSTRDTTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLFVIPPWSNMWLVGSIILTMILHVLILYIPPLSVLF SVTPLSWSDWKIILYLSFPVIIIDEILKFFSRKPNGLRLGLRFRRNDFIPKSDRHDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	0	1
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	1.0	0.8853
AT2G25760			Protein kinase family protein ...		Lus10014152 [exp]	3.0	0.8001
AT4G11800			Calcineurin-like metallo-phosp...		Lus10021750 [exp]	3.7	0.8074
AT2G46320			Mitochondrial substrate carrie...		Lus10012635 [exp]	6.3	0.7537
AT4G11800			Calcineurin-like metallo-phosp...		Lus10042668 [exp]	7.5	0.8277
AT4G24100			Protein kinase superfamily pro...		Lus10033230 [exp]	7.7	0.8314
AT1G74860			unknown protein		Lus10036649 [exp]	9.5	0.7844
AT5G09230		AtSRT2, SRT2	sirtuin 2 (.1.2.3.4.5.6.7)		Lus10029531 [exp]	9.6	0.8147
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	10.2	0.8013
AT5G11700			unknown protein		Lus10043045 [exp]	11.4	0.7988

Compare expression of checked genes

Lus10007734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.