Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37630 100 / 8e-24 CYCD5;1 cyclin d5;1 (.1.2) AT1G70210 89 / 5e-20 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 89 / 6e-20 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT2G22490 89 / 2e-19 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G10440 82 / 1e-17 CYCD4;2 cyclin d4;2 (.1) AT4G34160 74 / 2e-14 CYCD3;1 CYCLIN D3;1 (.1) AT3G50070 72 / 6e-14 CYCD3;3 CYCLIN D3;3 (.1) AT5G67260 69 / 5e-13 CYCD3;2 CYCLIN D3;2 (.1) AT4G03270 57 / 3e-09 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 56 / 1e-08 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018688 [exp] 542 / 0 AT4G37630 105 / 5e-26 cyclin d5;1 (.1.2) Lus10029194 [exp] 86 / 8e-19 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 79 / 3e-16 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10024796 [exp] 79 / 4e-16 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10018739 [exp] 77 / 2e-15 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10019825 [exp] 76 / 6e-15 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 73 / 3e-14 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 73 / 4e-14 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10014089 [exp] 72 / 6e-14 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119000 [exp] 159 / 3e-46 AT4G37630 119 / 4e-31 cyclin d5;1 (.1.2) Potri.014G016700 [exp] 154 / 3e-44 AT4G37630 142 / 7e-40 cyclin d5;1 (.1.2) Potri.007G055300 [exp] 149 / 4e-42 AT4G37630 198 / 3e-61 cyclin d5;1 (.1.2) Potri.002G103500 [exp] 92 / 8e-21 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.008G146600 [exp] 89 / 5e-20 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.001G292300 [exp] 87 / 4e-19 AT2G22490 178 / 1e-52 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 86 / 6e-19 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.009G086700 [exp] 84 / 8e-18 AT1G70210 168 / 3e-49 CYCLIN D1;1 (.1) Potri.002G123000 [exp] 81 / 1e-16 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.014G023000 [exp] 81 / 1e-16 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007735 pacid=23149223 polypeptide=Lus10007735 locus=Lus10007735.g ID=Lus10007735.BGIv1.0 annot-version=v1.0 ATGGCCGACAATGTGAATCTTCTCTGTAACGAGGACATCTTCGACGCCGCATCCACCCCTGCCGCTCCTCCGCCGTCAGGACAGCCTATTGATGGTGATG ATGATTTGTTTAGAGAAATATGTTTCAAGTATGACAGTCAAATCGGAGGAGACCAAGAGGAGGAGTTCGTTAGATACTTGGTGGAAAAGGACTCTGTCCA TGGATTCAGAGTATCAGGTGGTGGTGGTGGTGGTCAAAGCGTTGATTTTGATGAATGGGTCAGACGCCCTCGTATCAAAGCCATCGATTGGATTCTCAAT ACTAGAACTTCACTCGGGCTCCGCTGGAAAACGGCGCATCTTTCTGTCTGCTACATGGATCGCTTTTTGACGATTTTCTACATTGAGCGGCAGTGGCTGT GGGCAGTGAGGCTTCTGCAGATGGCGTGTTTATCACTGGCAGCCAAATTGGAAGAGACGGATGCTGCAACGCATTCTCTGGTTTCGTATCAAGATAGGGG TATCGAATTCGGATGTGAAGGAATTAGGAGAATGGAGATTCATGTTATGAACAACTTGGAATATCGACTGAACACTCCCACTCCTTTTGATTATATCCCC TGTTTCATCGTCAAGGCGGTCGAGGTTTGCCCGTCCAGAGAAATGGTCTCGCGGATTGCCAAATTGGTATTTGCTTTTACCAAAGAAGTGAACTTGACAA ACCACAGGCCGGCTGCAATAGCAATTGCTGCAATCATGGCCGGGATGGATCAGAAATTGGAAGAATCCGCAGTTGTTGCTCGAATGAATACATTCGTTTA TACTCATTTGCTCGACATTGGGAATGTGGTCGAGTGTTACAGTTTGATGAAGAATATAAATTTGGAAGATAAAGGAGAAAGCTCAGTGATAATTTCTCCT GATGTGTCGCCTGGAAGATACGATGATTTTGAAGGGGAAAGAAGTTTCTCGGTGTCTTTTGGTACTACTAAGAGAAGGAGGCTTGATTTTGATAGGCCAC CTGATCGTCCACCGGATCTGTGA
AA sequence Show only first row Show all	>Lus10007735 pacid=23149223 polypeptide=Lus10007735 locus=Lus10007735.g ID=Lus10007735.BGIv1.0 annot-version=v1.0 MADNVNLLCNEDIFDAASTPAAPPPSGQPIDGDDDLFREICFKYDSQIGGDQEEEFVRYLVEKDSVHGFRVSGGGGGGQSVDFDEWVRRPRIKAIDWILN TRTSLGLRWKTAHLSVCYMDRFLTIFYIERQWLWAVRLLQMACLSLAAKLEETDAATHSLVSYQDRGIEFGCEGIRRMEIHVMNNLEYRLNTPTPFDYIP CFIVKAVEVCPSREMVSRIAKLVFAFTKEVNLTNHRPAAIAIAAIMAGMDQKLEESAVVARMNTFVYTHLLDIGNVVECYSLMKNINLEDKGESSVIISP DVSPGRYDDFEGERSFSVSFGTTKRRRLDFDRPPDRPPDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10007735 [exp]	0	1
AT3G56130			biotin/lipoyl attachment domai...		Lus10017424 [exp]	3.7	0.8777
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10026803 [exp]	5.5	0.8991
AT1G03470			Kinase interacting (KIP1-like)...		Lus10005933 [exp]	7.3	0.8925
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004290 [exp]	18.3	0.8672
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10028544 [exp]	18.7	0.8803
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10021611 [exp]	21.9	0.8828
AT2G37420			ATP binding microtubule motor ...		Lus10025304 [exp]	22.3	0.8879
AT2G34040			Apoptosis inhibitory protein 5...		Lus10005277 [exp]	26.6	0.8355
AT4G17240			unknown protein		Lus10039062 [exp]	27.5	0.8692
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10012608 [exp]	28.9	0.8604

Compare expression of checked genes

Lus10007735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.