Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03990 185 / 4e-57 alpha/beta-Hydrolases superfamily protein (.1) AT4G37470 112 / 6e-29 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 97 / 3e-23 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018686 [exp] 237 / 3e-77 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10037651 [exp] 115 / 4e-30 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10014859 [exp] 114 / 7e-30 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 114 / 1e-29 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 112 / 5e-29 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10015633 [exp] 96 / 4e-24 AT4G37470 188 / 1e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 73 / 1e-14 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 72 / 2e-14 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10017735 [exp] 69 / 6e-13 AT3G24420 290 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052000 [exp] 125 / 4e-34 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G145000 [exp] 122 / 5e-33 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 94 / 4e-22 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 84 / 1e-18 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 0 / 1 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 0 / 1 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007737 pacid=23149219 polypeptide=Lus10007737 locus=Lus10007737.g ID=Lus10007737.BGIv1.0 annot-version=v1.0 ATGGTCACCGGTAAACGCCTGCTGGAGGCCCTCAACGTCCGACGCCTGGGATCCGGGGACCGGATCCTGGTGTTCGCACATGGCGTCGGAACCGACCAGT CAGCGTGGCAGCGCATTCTCCCCTTCTTCACCCAGAGCTACACCGTCATCCTCTACGACCTCGTCTGCGCCGGCAGCGTCAACCCTGACTACTTCGACTT CAACCGCTACACCACTCTCGACCCTTACGTCGACGACCTCCTCAACATCCTAGACGCCCACCGCGTCCACCCCTGCGCCACAGACCGCACACACGCCATT CCGCTGCGCCTACGTCGGCCACTCCGTCTCTGCCATGATCGGCCTCCTCGCTTCCATCCGCCGCCCCGAGCTCTTCTCCAAGCTCATCCTCATCGGCGCC TCCCCCAGGATTACCATGGGGGATTCGAGGAGAGGGAGATAGAGGAAGTGTTTTCGGCAATGGAGGCCAACTATGAGGCGTGGGTGCAAGGGTTTGCGCC GTTGGCTGGGGGGGGTGGCGTGCCGGCGGGAAGCAGACGTGCCGGCGGCGGTGAGAGAATTCAGCCGGACGCTGTTCAACATGAGGCCGGACATCACTCT CTTTGTCTCCAGGACGGTGTTCAACAGCGACTTCAGGGGGATTTTGGGACTGGTCAAAGTCCCTTGCTGCATCATCCAGACCTCCAAGGACATGTCCGTA CCTCCATCTGTAGCCGACTACATGAAGACCCACTTGGGTGGCCGGACCACCGTCGAGATTCTGATGACGGAAGGCCATTTGCCTCACTTGAGCGCTCCTG GCCTCCTTGCCCAGGTTCTCAGGCGAGCACTAGCCCGATGACTGGTGAAGAGAATAAAAAGATTGAAAAAAAGAAGCCGGCGAACCTAATCCTGCCGCTG GGAGCCTTTCTTTTATGGGAAGTGGGGCCTCACTAA
AA sequence Show only first row Show all	>Lus10007737 pacid=23149219 polypeptide=Lus10007737 locus=Lus10007737.g ID=Lus10007737.BGIv1.0 annot-version=v1.0 MVTGKRLLEALNVRRLGSGDRILVFAHGVGTDQSAWQRILPFFTQSYTVILYDLVCAGSVNPDYFDFNRYTTLDPYVDDLLNILDAHRVHPCATDRTHAI PLRLRRPLRLCHDRPPRFHPPPRALLQAHPHRRLPQDYHGGFEEREIEEVFSAMEANYEAWVQGFAPLAGGGGVPAGSRRAGGGERIQPDAVQHEAGHHS LCLQDGVQQRLQGDFGTGQSPLLHHPDLQGHVRTSICSRLHEDPLGWPDHRRDSDDGRPFASLERSWPPCPGSQASTSPMTGEENKKIEKKKPANLILPL GAFLLWEVGPH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10007737 [exp]	0	1
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	1.4	0.8783
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	4.9	0.8491
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	11.7	0.8118
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	13.3	0.8281
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	18.2	0.8085
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	20.0	0.7955
AT4G36210			Protein of unknown function (D...		Lus10010626 [exp]	21.3	0.7506
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	22.4	0.8036
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	22.6	0.7891
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	29.3	0.7766

Compare expression of checked genes

Lus10007737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.