Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01400 555 / 0 ARM repeat superfamily protein (.1) AT5G58680 486 / 1e-173 ARM repeat superfamily protein (.1) AT2G23140 280 / 2e-87 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT4G16490 268 / 3e-86 ARM repeat superfamily protein (.1) AT5G67340 244 / 9e-75 ARM repeat superfamily protein (.1) AT3G54790 237 / 4e-72 ARM repeat superfamily protein (.1.2) AT3G46510 233 / 4e-71 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 228 / 3e-69 ATPUB14 plant U-box 14 (.1) AT1G23030 227 / 5e-69 PUB11 ARM repeat superfamily protein (.1) AT1G71020 223 / 9e-69 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018684 [exp] 414 / 8e-147 AT3G01400 358 / 2e-124 ARM repeat superfamily protein (.1) Lus10039047 [exp] 282 / 4e-92 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10011514 [exp] 276 / 3e-84 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 272 / 6e-83 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 265 / 5e-82 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10010499 [exp] 256 / 1e-81 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10022919 [exp] 255 / 2e-78 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016016 [exp] 238 / 8e-73 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10016565 [exp] 237 / 3e-72 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118800 [exp] 561 / 0 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 548 / 0 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 285 / 4e-89 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 283 / 1e-88 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 270 / 9e-84 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 269 / 9e-84 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.006G015100 [exp] 262 / 9e-84 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.016G010800 [exp] 260 / 2e-83 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 244 / 4e-75 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 242 / 2e-74 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10007738 pacid=23149250 polypeptide=Lus10007738 locus=Lus10007738.g ID=Lus10007738.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGTTACGGCGACATCTCCGTTACCGACCATTCCTCCGCTTTCAGCGACTGTAACAGCGACAGATCTGGCGAATTCCCAACTGGCTCATCCG AGAGCCGCCGCCTCTTAGTCTCTTGCGCCGCTGACAATTCCGACGACCTCATGCTACAGCTCGTCTCCAGTCTCGACTCCTGTTCCATTGACGAGCAGAA GCAGGCCGCCATGGAAATCAGGCTTCTCGCCAAGAACAAGCCAGAGAACCGACTCAAGATTGCTAAAGCAGGAGCAATCAGGCCCTTGATTTCCCTAGTT TCCTCCAACGATTCTCAGCTCCAGGAGTACGGCGTCACCGCGATTCTCAATTTGTCTCTCTGCGACGAGAACAAAGAGGCGCTGGCTTCTTCCGGCGCGA TTAAGCCTCTGATTAGAGCTCTCAAGTCCGGCACGGCCACAGCCAAGGAGAACGCCGCCTGCGCTCTGCTCCGGTTGTCACAGGTGGAAGAGAATAAAAT CGCCATCGGAAGGTCGGGGGCGATTCCGCCGCTGGTGAGCTTACTAGAGAGCGGCGGAATCCGGGGGAAGAAAGACGCGTCAACCGCGCTCTACTCGTTG TGCTCCGTGAAGGAGAACAAGATGAGAGCGGTTCAAGCCGGGATCATGAAGCCGCTGGTGGAATTGATGGCGGATTTCGGGTCAAACATGGTGGATAAAG CCGCGTACGTGCTGAGCGTATTGGTTTCTGTGCCAGAGGCAAGGTCGTCGCTGGTGGAAGAAGCTGGAATCCCAGTGCTGGTAGAGATCGTCGAGGTCGG TTCTCAACGGCAGAAGGAGATCGCGGTGGCCATACTGCTCCAGCTTTGCGAGGACAATTTAGTTTATCGGGCGATGGTGGCGCGTGAAGGAGCAATACCG CCGTTGGTTGCTCTGTCACAGTCCGGTACCAATCGCGCCAAGCAAAAGGCAGAGACACTAATAGAGCTGCTGAGGCAACCGAGATCCGGCAAGGGTGCTG GGAGGGCATCAGAGGTGTCGGTTTGA
AA sequence Show only first row Show all	>Lus10007738 pacid=23149250 polypeptide=Lus10007738 locus=Lus10007738.g ID=Lus10007738.BGIv1.0 annot-version=v1.0 MGRSYGDISVTDHSSAFSDCNSDRSGEFPTGSSESRRLLVSCAADNSDDLMLQLVSSLDSCSIDEQKQAAMEIRLLAKNKPENRLKIAKAGAIRPLISLV SSNDSQLQEYGVTAILNLSLCDENKEALASSGAIKPLIRALKSGTATAKENAACALLRLSQVEENKIAIGRSGAIPPLVSLLESGGIRGKKDASTALYSL CSVKENKMRAVQAGIMKPLVELMADFGSNMVDKAAYVLSVLVSVPEARSSLVEEAGIPVLVEIVEVGSQRQKEIAVAILLQLCEDNLVYRAMVAREGAIP PLVALSQSGTNRAKQKAETLIELLRQPRSGKGAGRASEVSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01400			ARM repeat superfamily protein...		Lus10007738 [exp]	0	1
AT3G05500			Rubber elongation factor prote...		Lus10031493 [exp]	1.0	0.9042
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10020389 [exp]	3.5	0.8881
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	9.1	0.8928
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	10.4	0.8852
AT3G01400			ARM repeat superfamily protein...		Lus10018684 [exp]	10.6	0.8483
AT3G21570			unknown protein		Lus10034002 [exp]	15.9	0.8673
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	15.9	0.8738
AT3G20310	AP2_ERF	ATERF7, ATERF-7	ethylene response factor 7 (.1...		Lus10043182 [exp]	16.4	0.8848
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018696 [exp]	16.4	0.8695
AT3G03280			unknown protein		Lus10013490 [exp]	17.1	0.8802

Compare expression of checked genes

Lus10007738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.